RNA id: TU110886


Basic Information

Item Value
RNA id TU110886
length 280
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G88867
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 33710774 ~ 33711053 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCGAACAGCGCCTTCCAAACCGCAGGAGACACGTGTTCTGAAGGTAGGCCAAAGCAATGTGTTTAATGCCcagttttattcagatttcatGGTATGCCATAGAACAAGTTGTtacatattatgaattaattacatcttctaaaacataataatgtgtaaatttACGGgaccaatgtttgttttttgatttgacaGTTGTCAACAAGACCGTGTTTAACCCACATAATTACGcactcccccacccaccccaagTCACAGAGCAAACTTTGAATGGAggtg

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110855 lncRNA upstream 833102 32877399 ~ 32877672 (+) True G88838
TU110850 lncRNA upstream 904897 32805318 ~ 32805877 (+) True G88833
TU110786 lncRNA upstream 1643367 32065283 ~ 32067407 (+) True G88776
TU110780 lncRNA upstream 1681608 32028958 ~ 32029166 (+) True G88771
TU110767 lncRNA upstream 1721723 31988784 ~ 31989051 (+) True G88761
TU110891 lncRNA downstream 50190 33761243 ~ 33761474 (+) True G88872
TU110901 lncRNA downstream 134043 33845096 ~ 33845340 (+) True G88882
TU110903 lncRNA downstream 200367 33911420 ~ 33911775 (+) True G88884
TU110906 lncRNA downstream 247542 33958595 ~ 33959180 (+) True G88887
TU110949 lncRNA downstream 444368 34155421 ~ 34155966 (+) True G88927
AMCG00021855 mRNA upstream 124274 33548596 ~ 33586500 (+) True AMCG00021855
AMCG00021856 mRNA upstream 172864 33475168 ~ 33537910 (+) True AMCG00021856
AMCG00021854 mRNA upstream 257121 33435316 ~ 33453653 (+) True AMCG00021854
AMCG00021857 mRNA upstream 315549 33382419 ~ 33395225 (+) True AMCG00021857
AMCG00021853 mRNA upstream 410544 32995224 ~ 33300230 (+) True AMCG00021853
AMCG00021858 mRNA downstream 99421 33810474 ~ 33822086 (+) True AMCG00021858
AMCG00021859 mRNA downstream 563613 34274666 ~ 34286319 (+) True AMCG00021859
AMCG00021862 mRNA downstream 593896 34304949 ~ 34323922 (+) True AMCG00021862
AMCG00021869 mRNA downstream 695796 34406849 ~ 34413209 (+) True AMCG00021869
AMCG00021876 mRNA downstream 885863 34596916 ~ 34607621 (+) True AMCG00021876
TU110433 other upstream 3316553 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 3316553 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 4328501 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 4328501 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 4645435 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 1215500 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 1326786 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 1500080 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 2253518 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 2253518 35964571 ~ 35967384 (+) True G89299

Expression Profile