RNA id: TU110890


Basic Information

Item Value
RNA id TU110890
length 349
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G88871
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 33760272 ~ 33760620 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggatcattttaattttaatgtctacCCCGTTGAGCATGAGTTTTTCTTGGAAAAATATGTCTGCATGAATATGCCCCATTAGCTCAAAGGTCCACCCTTCTGTTGAAAAGGCTGTTCTTTTTTGCAAACCTTGATTGAGTCCCTCTGGATCCTTGTCGTCCATAGCTCCCGGGGTGTCTTTGAAGAAAAGGCCGGGGCTGAACTGTTTGCTTAGGGTCTCCTCACTATAATTAAGGATACACTCCATCATGGCTCTATAGGGGTAAGTATTGCTGCTTTGACTAATGAGCCGATCTCCCAGGGTCACATCCACCTGTGAAAACATGGTGGCCACCGGGTAATTGATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110885 lncRNA downstream 89353 33670467 ~ 33670919 (-) True G88866
TU110848 lncRNA downstream 1067776 32692271 ~ 32692496 (-) True G88831
TU110805 lncRNA downstream 1665333 32094702 ~ 32094939 (-) True G88795
TU110768 lncRNA downstream 1771222 31988774 ~ 31989050 (-) True G88762
TU110747 lncRNA downstream 1900439 31859409 ~ 31859833 (-) True G88742
TU110892 lncRNA upstream 622 33761242 ~ 33761474 (-) True G88873
TU110902 lncRNA upstream 84494 33845114 ~ 33845452 (-) True G88883
TU110940 lncRNA upstream 215460 33976080 ~ 33980828 (-) True G88918
TU110961 lncRNA upstream 416427 34177047 ~ 34177481 (-) True G88939
TU111017 lncRNA upstream 499384 34260004 ~ 34353710 (-) False AMCG00021867
AMCG00021845 mRNA downstream 1662753 32095525 ~ 32097519 (-) True AMCG00021845
AMCG00021849 mRNA downstream 1691157 32067265 ~ 32069115 (-) False AMCG00021849
AMCG00021846 mRNA downstream 1712688 32047110 ~ 32047584 (-) True AMCG00021846
AMCG00021847 mRNA downstream 1722693 32031688 ~ 32037579 (-) True AMCG00021847
AMCG00021848 mRNA downstream 1742138 32011442 ~ 32018134 (-) True AMCG00021848
AMCG00021861 mRNA upstream 246039 34006659 ~ 34014890 (-) True AMCG00021861
AMCG00021860 mRNA upstream 418972 34179592 ~ 34189526 (-) True AMCG00021860
AMCG00021864 mRNA upstream 482245 34242865 ~ 34249647 (-) True AMCG00021864
AMCG00021865 mRNA upstream 491054 34251674 ~ 34260396 (-) True AMCG00021865
AMCG00021863 mRNA upstream 503195 34263815 ~ 34274711 (-) True AMCG00021863
TU110795 other downstream 1690808 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 2628087 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 2872060 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 3335660 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 4017464 29730077 ~ 29742808 (-) True G88405
TU111038 other upstream 586368 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 586368 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 1614396 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 2183132 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 2654419 36415039 ~ 36438350 (-) False AMCG00021895

Expression Profile