RNA id: TU110940


Basic Information

Item Value
RNA id TU110940
length 2338
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G88918
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 33976080 ~ 33980828 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttatatttttatttttgtagctaTTACATACCACtgtttaaaaaggcaaacagcaGTCATCATCAGATAATCAGTCCCGTGCTTCAATCTTTTGTCCTTTCCACACATACACTTAcacctttctttctgtgttgtACAAAGGTTACCAATCACTGTGCAGTGTGTTTAAAGGCTACTGTTGTAATAGGCACCAAGGCATAGGAAACAGGATCAAACAAAAGGTCTCCCTCCTCCCTAATAATAAACTCACAACTATATAAATCCAGAAATAAACTTTGCCATCTGTTCCTCCTGTATGTCTCACTCACTTTTGTCACCCAATAAGGCACCCAGCATTCAGAGCTTGACTGGCACTGCTATCATCTGAAATAGATCTGTCATCACTGACCAGTGTCAATGAGGCACTCCTGCTTGTAAAATCACAGAGATCTGATTGGTGCAGCTGACCTCCAGTGTCTAAAAAGTGAGATTCTTCAGATTACAAGGTATTGGGTGTGCTTCTTTCTTGTAGTAAATTACAGTGTAATCTAATTTAGTGTATATACACTATGttccattattatatatatatatatatatatatatatatatatatatatatatacagttaaacACAGTATATACTTTTGGGTTTGTACACTTTAGACTCCATAGAAATCAGCGGTGTGGCAGTCAAAAGTAACCCACTAAGTATATAAATAGTAATGGAAAATAGGTTACACACCCCttgtcttaactcagttcaatcaatgacaattttacatttttttctagGCTGAATCTCTGTTCAACATACTCTGAAAATAATTGATgagtacagttttaaaaacaatacgtTTTtatcaaagtaaaaataagtatgtcaaatgtttacaattgaaaacaaatgatcaGTCAAACATATTTTCCACTTTCCTAAGTAATTAATTTGACATACTATATTTTCAACAAGGACATTcaactattatcattatttttccttgtctttttctctattgcctttttgtttgtaaacttcTGACCTCTTATACAAGGATTATTCTGTCAGAAGGACCATCTGGTTTGATCATTAATAGAGCATCTTTTCACGTGTCTACATTTTACCAGACACTCTCTAAAATCTCAGTGTATATTCCAAAactttattaatgaaaaataaaatagggcatctttcttatttaaacaatttgttttgtttccagctAAAAGTTGAGTTtactctgcttttatttatgatCTCATAACATGTCCTGCAAGTTATATATAACACCACATAAGAGATCCAGAACCAAACCATTTTCATGACAGGGACTTTTCAACAAtttagaacagaaaaaaaaagttaatgaatGTACCATTGAGGTTTGAATGGAAGGTTTCCCCTGGTttgcaacacaaaaataacatttttccagcccaattaatatttcagtagCCTTAGGCTTCATTGCCACTGGGAACATCTGTCTAGGAAACAAATGTCCGTAACCTACATAAAGCTAGTGATACCCAGAAGGTGATATCAGGATATCACACACAAGTAGAAACATGTTGTTCCTGCAGGCTGTGGCTTCTCTTTTAGTTAGTGCCTTGTCCTcttcatcattttgttttcacagaacTATAGGAAATAGTAGGTACCTTCaattcagataaaaaaaaacgaataaacaCTTGTTGATGTAGCTAGAACACCAGGAAGGTAACAAATAGGCCTAAGAATATGCATTCAATTTGAACCatgacaatttattttcctattataGTCTAAATAGTCTTTCTAAatagttattttcttgtttgcaaAATGATACACTGGTTCACATATCTGTTCAGATTAAGTTACAGCACcacattcatataaaaaaaataaaaataaaaataatggttttgtttaaagtaaaacaagacagcagtttttttttattcagcacTCATTTTACAGCTTAAAAACATAGGAACATGGAAAATTGCTAAAACTAGTTTAAGAattaagacaaaacaaaagttgatAAAATACAGTGGCTCTGAGGTGGAATGTGTTACTGTGAGGTCAGAGAAATGATCTTACACAGCTGGAACCCACATGCTTAATTTCTAATGCAACTGATGACAAATCACTGAAGGAACCATTCTTCATTGCACTACCTTGGCAGCATCTCCTCAAGATCAGCAACAACATAGGAAACAACCGCCCACACAGCAGAGCAGAGGTTCATTTGTACAGCATTCTGGACTGTCATTGTGTCTCCGTCACTGTGGTGGAACCAGAAATATCTACTAACATCCACATTGAGACTGGCTCCTttgtcttcaatgtttccttccgaatccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110902 lncRNA downstream 130628 33845114 ~ 33845452 (-) True G88883
TU110892 lncRNA downstream 214606 33761242 ~ 33761474 (-) True G88873
TU110890 lncRNA downstream 215460 33760272 ~ 33760620 (-) True G88871
TU110885 lncRNA downstream 305161 33670467 ~ 33670919 (-) True G88866
TU110848 lncRNA downstream 1283584 32692271 ~ 32692496 (-) True G88831
TU110961 lncRNA upstream 196219 34177047 ~ 34177481 (-) True G88939
TU111017 lncRNA upstream 279176 34260004 ~ 34353710 (-) False AMCG00021867
TU111025 lncRNA upstream 303556 34284384 ~ 34286302 (-) True G88991
TU111037 lncRNA upstream 363807 34344635 ~ 34345989 (-) True G89003
TU111045 lncRNA upstream 406426 34387254 ~ 34388010 (-) False AMCG00021868
AMCG00021845 mRNA downstream 1878561 32095525 ~ 32097519 (-) True AMCG00021845
AMCG00021849 mRNA downstream 1906965 32067265 ~ 32069115 (-) False AMCG00021849
AMCG00021846 mRNA downstream 1928496 32047110 ~ 32047584 (-) True AMCG00021846
AMCG00021847 mRNA downstream 1938501 32031688 ~ 32037579 (-) True AMCG00021847
AMCG00021848 mRNA downstream 1957946 32011442 ~ 32018134 (-) True AMCG00021848
AMCG00021861 mRNA upstream 25831 34006659 ~ 34014890 (-) True AMCG00021861
AMCG00021860 mRNA upstream 198764 34179592 ~ 34189526 (-) True AMCG00021860
AMCG00021864 mRNA upstream 262037 34242865 ~ 34249647 (-) True AMCG00021864
AMCG00021865 mRNA upstream 270846 34251674 ~ 34260396 (-) True AMCG00021865
AMCG00021863 mRNA upstream 282987 34263815 ~ 34274711 (-) True AMCG00021863
TU110795 other downstream 1906616 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 2843895 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 3087868 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 3551468 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 4233272 29730077 ~ 29742808 (-) True G88405
TU111038 other upstream 366160 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 366160 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 1394188 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 1962924 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 2434211 36415039 ~ 36438350 (-) False AMCG00021895

Expression Profile