RNA id: TU110960


Basic Information

Item Value
RNA id TU110960
length 525
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G88938
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34176954 ~ 34177478 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTTGCctaatccttttatttttgaGCCGCGTTCACAGGTTCCGAATGTGTATATTGATGGATCAGCATACATTTGTAAGAACTCTGGTAGATTGCTAGCaggttttgcagttttgttccCCGAGTACACTATAAAATTTTCTTGTCCAGGACAATCGTCACAATATTCTGAATTGGCAGCTTTGCTAGAAACCCTTAGGATAACTGATGATTCTGCAGATATTTATACAGATAGTGCTTATGTTGTTACTGCATGTACCTTGCTACCTCTCTATGCCAAAAATAATTTCCGATCATCAGATGATCGTCCCTTGAAACATACTACCTTACTACAGCATATTTGGTCTTCTATTCAGTCAAGACCAGGCGaaattgctgttttgaaagttaAGGCCCATGTGAGAAAGGATCGTAGAGGTGAACATCATATCAGAAATGATGAAGCTGATCGGTGTGCTAAATTTGCTGCTAGACACTGTGGTCCGTGGCATTTGCCAGATCCATTGCCTACCAATGAAAATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110959 lncRNA upstream 248 34176389 ~ 34176706 (+) True G88937
TU110949 lncRNA upstream 20988 34155421 ~ 34155966 (+) True G88927
TU110906 lncRNA upstream 217774 33958595 ~ 33959180 (+) True G88887
TU110903 lncRNA upstream 265179 33911420 ~ 33911775 (+) True G88884
TU110901 lncRNA upstream 331614 33845096 ~ 33845340 (+) True G88882
TU111008 lncRNA downstream 192492 34369970 ~ 34372180 (+) True G88980
TU111009 lncRNA downstream 192492 34369970 ~ 34373665 (+) False G88980
TU111010 lncRNA downstream 206481 34383959 ~ 34386202 (+) True G88981
TU111044 lncRNA downstream 209776 34387254 ~ 34387672 (+) True G89006
TU111048 lncRNA downstream 242313 34419791 ~ 34420057 (+) True G89010
AMCG00021858 mRNA upstream 354868 33810474 ~ 33822086 (+) True AMCG00021858
AMCG00021855 mRNA upstream 590454 33548596 ~ 33586500 (+) True AMCG00021855
AMCG00021856 mRNA upstream 639044 33475168 ~ 33537910 (+) True AMCG00021856
AMCG00021854 mRNA upstream 723301 33435316 ~ 33453653 (+) True AMCG00021854
AMCG00021857 mRNA upstream 781729 33382419 ~ 33395225 (+) True AMCG00021857
AMCG00021859 mRNA downstream 97188 34274666 ~ 34286319 (+) True AMCG00021859
AMCG00021862 mRNA downstream 127471 34304949 ~ 34323922 (+) True AMCG00021862
AMCG00021869 mRNA downstream 229371 34406849 ~ 34413209 (+) True AMCG00021869
AMCG00021876 mRNA downstream 419438 34596916 ~ 34607621 (+) True AMCG00021876
AMCG00021873 mRNA downstream 447570 34625048 ~ 34678756 (+) True AMCG00021873
TU110433 other upstream 3782733 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 3782733 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 4794681 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 4794681 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 5111615 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 749075 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 860361 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 1033655 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 1787093 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 1787093 35964571 ~ 35967384 (+) True G89299

Expression Profile