RNA id: TU110961


Basic Information

Item Value
RNA id TU110961
length 435
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G88939
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34177047 ~ 34177481 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAGACATTTTCATTGGTAGGCAATGGATCTGGCAAATGCCACGGACCACAGTGTCTAGCAGCAAATTTAGCACACCGATCAGCTTCATCATTTCTGATATGATGTTCACCTCTACGATCCTTTCTCACATGGGCCTtaactttcaaaacagcaatttCGCCTGGTCTTGACTGAATAGAAGACCAAATATGCTGTAGTAAGGTAGTATGTTTCAAGGGACGATCATCTGATGATCGGAAATTATTTTTGGCATAGAGAGGTAGCAAGGTACATGCAGTAACAACATAAGCACTATCTGTATAAATATCTGCAGAATCATCAGTTATCCTAAGGGTTTCTAGCAAAGCTGCCAATTCAGAATATTGTGACGATTGTCCTGGACAAGAAAATTTTATAGTGTACTCGGggaacaaaactgcaaaacctGCTAGCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU110940 lncRNA downstream 196219 33976080 ~ 33980828 (-) True G88918
TU110902 lncRNA downstream 331595 33845114 ~ 33845452 (-) True G88883
TU110892 lncRNA downstream 415573 33761242 ~ 33761474 (-) True G88873
TU110890 lncRNA downstream 416427 33760272 ~ 33760620 (-) True G88871
TU110885 lncRNA downstream 506128 33670467 ~ 33670919 (-) True G88866
TU111017 lncRNA upstream 82523 34260004 ~ 34353710 (-) False AMCG00021867
TU111025 lncRNA upstream 106903 34284384 ~ 34286302 (-) True G88991
TU111037 lncRNA upstream 167154 34344635 ~ 34345989 (-) True G89003
TU111045 lncRNA upstream 209773 34387254 ~ 34388010 (-) False AMCG00021868
TU111049 lncRNA upstream 242279 34419760 ~ 34420279 (-) True G89011
AMCG00021861 mRNA downstream 162157 34006659 ~ 34014890 (-) True AMCG00021861
AMCG00021845 mRNA downstream 2079528 32095525 ~ 32097519 (-) True AMCG00021845
AMCG00021849 mRNA downstream 2107932 32067265 ~ 32069115 (-) False AMCG00021849
AMCG00021846 mRNA downstream 2129463 32047110 ~ 32047584 (-) True AMCG00021846
AMCG00021847 mRNA downstream 2139468 32031688 ~ 32037579 (-) True AMCG00021847
AMCG00021860 mRNA upstream 2111 34179592 ~ 34189526 (-) True AMCG00021860
AMCG00021864 mRNA upstream 65384 34242865 ~ 34249647 (-) True AMCG00021864
AMCG00021865 mRNA upstream 74193 34251674 ~ 34260396 (-) True AMCG00021865
AMCG00021863 mRNA upstream 86334 34263815 ~ 34274711 (-) True AMCG00021863
AMCG00021866 mRNA upstream 149677 34327158 ~ 34348033 (-) True AMCG00021866
TU110795 other downstream 2107583 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 3044862 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 3288835 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 3752435 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 4434239 29730077 ~ 29742808 (-) True G88405
TU111038 other upstream 169507 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 169507 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 1197535 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 1766271 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 2237558 36415039 ~ 36438350 (-) False AMCG00021895

Expression Profile