RNA id: TU111008



Basic Information


Item Value
RNA id TU111008
length 507
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id G88980
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34369970 ~ 34373665 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


AtccaaaggttttattttaatttctgtgacaGTAACCTACAGCTTCACCAATGTCAGcacatttaaatgaacacataaaAGCATCCAGCTGCATATTGTTTTTGCAAGGTATGTTGCCGACTTACTTCTACTTAAATCTATTATCATTATACAACAGGTTTGTCAATCTGGTATTAAAAGGTCTTAGAGTTACCATCATGGGTAGCTTTCCACCAGGTTACTTATTGTCAGAGAAAAATGCTACCAATGTCTTGCAATCTTATAATCCACTCTGAGAATTTTTTCACGGTTAGTCACTTCTGTTAACAGGCATTAGAAAAATCCTATAATTGCAtggaatttctttttttttttaactcaactCTATTTCTCTTATTAATATACATCCTGAAAACTGTTAAACCTTAGGCAACAAAAGCTCTGTTATAGTCCTCTAAAGTACAATAAATTCCCAGTCAGTTTTTCCAGGACATTCCCTGACCTGCACCAAAGCCTTTtgaaactgaa

Function


GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU110960 lncRNA upstream 192492 34176954 ~ 34177478 (+) True G88938
TU110959 lncRNA upstream 193264 34176389 ~ 34176706 (+) True G88937
TU110949 lncRNA upstream 214004 34155421 ~ 34155966 (+) True G88927
TU110906 lncRNA upstream 410790 33958595 ~ 33959180 (+) True G88887
TU110903 lncRNA upstream 458195 33911420 ~ 33911775 (+) True G88884
TU111010 lncRNA downstream 11779 34383959 ~ 34386202 (+) True G88981
TU111044 lncRNA downstream 15074 34387254 ~ 34387672 (+) True G89006
TU111048 lncRNA downstream 47611 34419791 ~ 34420057 (+) True G89010
TU111320 lncRNA downstream 1034530 35406710 ~ 35406984 (+) True G89222
TU111386 lncRNA downstream 1488736 35860916 ~ 36195602 (+) True G89280
AMCG00021862 mRNA upstream 46048 34304949 ~ 34323922 (+) True AMCG00021862
AMCG00021859 mRNA upstream 83651 34274666 ~ 34286319 (+) True AMCG00021859
AMCG00021858 mRNA upstream 547884 33810474 ~ 33822086 (+) True AMCG00021858
AMCG00021855 mRNA upstream 783470 33548596 ~ 33586500 (+) True AMCG00021855
AMCG00021856 mRNA upstream 832060 33475168 ~ 33537910 (+) True AMCG00021856
AMCG00021869 mRNA downstream 34669 34406849 ~ 34413209 (+) True AMCG00021869
AMCG00021876 mRNA downstream 224736 34596916 ~ 34607621 (+) True AMCG00021876
AMCG00021873 mRNA downstream 252868 34625048 ~ 34678756 (+) True AMCG00021873
AMCG00021875 mRNA downstream 312835 34685015 ~ 34690667 (+) True AMCG00021875
AMCG00021874 mRNA downstream 327668 34699848 ~ 34716167 (+) True AMCG00021874
TU110433 other upstream 3975749 30267402 ~ 30394221 (+) False AMCG00021803
TU110432 other upstream 3975749 30388837 ~ 30394221 (+) False AMCG00021803
TU110265 other upstream 4987697 29378575 ~ 29382273 (+) False AMCG00021779
TU110267 other upstream 4987697 29378575 ~ 29382273 (+) False AMCG00021779
TU110172 other upstream 5304631 29060887 ~ 29065339 (+) True G88276
TU111156 other downstream 554373 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other downstream 665659 35037839 ~ 35041288 (+) False AMCG00021881
TU111226 other downstream 838953 35211133 ~ 35263537 (+) True G89142
TU111415 other downstream 1592391 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 1592391 35964571 ~ 35967384 (+) True G89299

Expression Profile