RNA id: TU111037


Basic Information

Item Value
RNA id TU111037
length 809
lncRNA type intronic
GC content 0.36
exon number 2
gene id G89003
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34344635 ~ 34345989 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

NNAAAGGCTTTGGTGCAGGTCAGGGAATGTCCTGGAAAAACTGACTGGGAATTTATGAGAGTACTATAACAGAGCTTTTGTTGCCTAAGGTCCTACAGTTTTCAGGTTGTAAGAGAAATAGAGTTgagttaaaacatttttctaaattccATGTAATTATAGGATTTTTCTATTGCCTGTTAACAGAAATGACTAACTGTGAAAAAATTCTCACAGTGGATTGTGGCTGCAAGCCATTGCTAGAGTTTCTATGTGACAATAAGTAACCAGGTGGAAAGCTACCCATGACTGTAACTCTAAGACCTTTTAAACCAGATTGTCACACCTCTTGCATAATAAGGAAGTAATTCGGCAACATACTTACAAAAAAGTATGCAACTGGATGCTtttatgtgttcatttaaatgtgCTGAAATTGGTGGAGCTGTAGATTACtcttacagaaattaaaataaaacctttggaTACTGTTCAAAGTTATCtcgcttttgtttttcctatttttttggtatgtaatttatatttagttCCAATCCTATAATGGGTGCTACATGTGATCCAAATGAATTTGTGTCAGAACTCTGACTGCATTATGAATGTAAAGTCCTGCACTTCATTGCATTAATGTGGTATTTCTCCTAGGTCATTTGCTGTATCTCTGTAGTAGAGTCTTCAAGCTGAAACACTCAAGTCAAATTCAGGTTCACACAAAGaTAATGACATACGACACATCAGCTACTGGAGTTGAAGCACATTGGTACCTTTTGCTGTCACCAGTTCCTTTATTTGTGGTTATCAATTAACCAAAT

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111025 lncRNA downstream 58333 34284384 ~ 34286302 (-) True G88991
TU110961 lncRNA downstream 167154 34177047 ~ 34177481 (-) True G88939
TU110940 lncRNA downstream 363807 33976080 ~ 33980828 (-) True G88918
TU110902 lncRNA downstream 499183 33845114 ~ 33845452 (-) True G88883
TU110892 lncRNA downstream 583161 33761242 ~ 33761474 (-) True G88873
TU111045 lncRNA upstream 41265 34387254 ~ 34388010 (-) False AMCG00021868
TU111049 lncRNA upstream 73771 34419760 ~ 34420279 (-) True G89011
TU111206 lncRNA upstream 733584 35079573 ~ 35081173 (-) True G89130
TU111310 lncRNA upstream 1024117 35370106 ~ 35370480 (-) True G89212
TU111340 lncRNA upstream 1059068 35405057 ~ 35405340 (-) True G89240
AMCG00021863 mRNA downstream 69924 34263815 ~ 34274711 (-) True AMCG00021863
AMCG00021865 mRNA downstream 84239 34251674 ~ 34260396 (-) True AMCG00021865
AMCG00021864 mRNA downstream 94988 34242865 ~ 34249647 (-) True AMCG00021864
AMCG00021860 mRNA downstream 155109 34179592 ~ 34189526 (-) True AMCG00021860
AMCG00021861 mRNA downstream 329745 34006659 ~ 34014890 (-) True AMCG00021861
AMCG00021867 mRNA upstream 2053 34348042 ~ 34356907 (-) True AMCG00021867
AMCG00021868 mRNA upstream 32712 34378701 ~ 34387667 (-) True AMCG00021868
AMCG00021870 mRNA upstream 399714 34745703 ~ 34757627 (-) True AMCG00021870
AMCG00021878 mRNA upstream 420863 34766852 ~ 34784712 (-) True AMCG00021878
AMCG00021879 mRNA upstream 444279 34790268 ~ 34809602 (-) True AMCG00021879
TU110795 other downstream 2275171 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 3212450 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 3456423 30877848 ~ 30888212 (-) True AMCG00021820
TU110482 other downstream 3920023 30337583 ~ 30424612 (-) True G88527
TU110330 other downstream 4601827 29730077 ~ 29742808 (-) True G88405
TU111038 other upstream 999 34346988 ~ 34380295 (-) False G89004
TU111040 other upstream 999 34346988 ~ 34351125 (-) True G89004
TU111315 other upstream 1029027 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 1597763 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 2069050 36415039 ~ 36438350 (-) False AMCG00021895

Expression Profile