RNA id: TU111049


Basic Information

Item Value
RNA id TU111049
length 520
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G89011
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 34419760 ~ 34420279 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

taagaacataagaaagtttacaaacgagaggaggccattcgacccatcgtgctcgtttggtgaccattaatatctaagtgatccaaggatcctatccagtctatttttaaatgttcccaaactttcagcttctaccacatcgctgggtagtttattccagattgtgactactatCTGTGtaaaaaagtgtctcctgttttccaatttgaataccttgaagcccaatttccatttgtgtccccgggtgcgtgtgtccctgctgatctggaaaagctcctctggtttgatgtggtcgatgcctttcatgattttgaagacttggatcaagtccccacgtagtctcctctgttccagggtgaaaaggttcagttccctcagtctctccgagtaggactttcccttcagacctggaataagtctggttgctctcctctgaactgcctctagagcagcaatatccttcttgaagtgtggtgcccagaactgcacacagtattccagataaGATCTAACTAGCGct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111045 lncRNA downstream 31750 34387254 ~ 34388010 (-) False AMCG00021868
TU111017 lncRNA downstream 66050 34260004 ~ 34353710 (-) False AMCG00021867
TU111037 lncRNA downstream 73771 34344635 ~ 34345989 (-) True G89003
TU111025 lncRNA downstream 133458 34284384 ~ 34286302 (-) True G88991
TU110961 lncRNA downstream 242279 34177047 ~ 34177481 (-) True G88939
TU111206 lncRNA upstream 659294 35079573 ~ 35081173 (-) True G89130
TU111310 lncRNA upstream 949827 35370106 ~ 35370480 (-) True G89212
TU111340 lncRNA upstream 984778 35405057 ~ 35405340 (-) True G89240
TU111347 lncRNA upstream 1034288 35454567 ~ 35455198 (-) True G89247
TU111367 lncRNA upstream 1291184 35711463 ~ 35711716 (-) True G89264
AMCG00021868 mRNA downstream 32093 34378701 ~ 34387667 (-) True AMCG00021868
AMCG00021867 mRNA downstream 62853 34348042 ~ 34356907 (-) True AMCG00021867
AMCG00021866 mRNA downstream 71727 34327158 ~ 34348033 (-) True AMCG00021866
AMCG00021863 mRNA downstream 145049 34263815 ~ 34274711 (-) True AMCG00021863
AMCG00021865 mRNA downstream 159364 34251674 ~ 34260396 (-) True AMCG00021865
AMCG00021870 mRNA upstream 325424 34745703 ~ 34757627 (-) True AMCG00021870
AMCG00021878 mRNA upstream 346573 34766852 ~ 34784712 (-) True AMCG00021878
AMCG00021879 mRNA upstream 369989 34790268 ~ 34809602 (-) True AMCG00021879
AMCG00021877 mRNA upstream 390877 34811156 ~ 34820379 (-) True AMCG00021877
AMCG00021885 mRNA upstream 891010 35311289 ~ 35351633 (-) True AMCG00021885
TU111038 other downstream 39465 34346988 ~ 34380295 (-) False G89004
TU111040 other downstream 68635 34346988 ~ 34351125 (-) True G89004
TU110795 other downstream 2350296 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 3287575 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 3531548 30877848 ~ 30888212 (-) True AMCG00021820
TU111315 other upstream 954737 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 1523473 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 1994760 36415039 ~ 36438350 (-) False AMCG00021895
TU111619 other upstream 2258248 36678527 ~ 36687642 (-) False AMCG00021897
TU111771 other upstream 3841108 38261387 ~ 38283855 (-) True G89598

Expression Profile