RNA id: TU111206


Basic Information

Item Value
RNA id TU111206
length 1575
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G89130
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 35079573 ~ 35081173 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGTTTTTATAGCACATTGGTTTATTTACATTAGAATATAGTGTTATCCTCAAAAAATAcaccagattttatttttttaaaccatgccTCATAACacaactttcatttttattagcAAAATCAACCAGTTAGTTCTGATGAATTATGTCGTTCTAATATTTTAAACCGGCTTAAacggaacaaaacaaaacaaaactgctttcGATGAGTGGATACATGTttttgtatatagttcattacTTGAGTTAGTAAAACATGcgaagcaaaaaatatatattatatatatatatatcaaaaatatgatgaaaaaaatgaaaatatcatgATGATTTACACAAGTCAAGTACTTTTTTAAGGTACAACAGAATACAAATGACAAACTTATTGCTATGTTGAACAAAAAAGGGGTTGGGAACACTGGTTAAAAAAGGCAACATGAAGCAAAGTTTTAAGATCCCTTTCCAAAGAGAGGTGACTAAATAGAGTATGTACATGGGACTTAGATGCGttagatttaaattatatattttttgactatcaaatactttttagtGTTCTTGACATAGATAAACTACCTTTGCACCCAATCAGTTTTCAATGTAACCAAGCTGAAAGTGTCTCATAAAAAACTGCCATAAAATAGGAATTCAGGGAACAATAAAGGggcatttataattataattaaaacgtCTTTGTGAAGGATGAAGCACAGTTGGCCCTATTCCTCAATAACTGGTTAAGAGGAGCAAACAGAAAGCAATGGGTCCTCTTGTCTGACAATATTGTTCATTAGACATGAGAGCAAGATCTGTTGCTTCTCAGATTGCTTTCAActcaacaaaacattttgagatTGATGAGCTCCTACTCTTGCAGCTGCTTTCAGTCCTTTTTAAGACTTCACATAAGAATGTGAACAGTGGATCAAGATATTCTATACTTTTATTTGTTAACTCATTTGTAACTGTCAAATACATCTTGTCTATACAATAGCGTAATCTGAAATGACCTGAAAAAACATACTGTAACCATGCCTCATAAATTATGTTGATAAGGCAATACTGCAACCGAGGCATCCTGATTTTTAAGTTTGATACTAAATAACACTGACCCAAACTACCATCTCCAATGGGTTCTCCTCTGAATTTGATAAACACTAtccaattataattattcataaGTATTTTAACTTAAATGGACTTGTCCTGTAGCCCATGTCTTCCAGTgtctgaaaacatatttttgtgtaGCACCTATtgttcatttcaatttcaatttacaatACAGAGTAAAAATGACATTGATGGACAATAGAAGGCAGCAGCTGTGGACTGTCCAGTGAGAGAATGCAGCTCCAGGAGTGAAGGCTTGTAGAAATTGTCTCAGTGTACAGTGTCTACAATAAGCTTATTCCTGATATCTCAGAGCATAAAGAGATTTCAAAGGTTCAATAGCCTCAGTTTTCTTCACGAGGGGGAGGTGTgatgggaggaggagggaaataCTTGAATGTagatctaaaaacaaaacaaaaagaatgactgaattaatgaaatgaactgaataaaatgtgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111049 lncRNA downstream 659294 34419760 ~ 34420279 (-) True G89011
TU111045 lncRNA downstream 691563 34387254 ~ 34388010 (-) False AMCG00021868
TU111017 lncRNA downstream 725863 34260004 ~ 34353710 (-) False AMCG00021867
TU111037 lncRNA downstream 733584 34344635 ~ 34345989 (-) True G89003
TU111025 lncRNA downstream 793271 34284384 ~ 34286302 (-) True G88991
TU111310 lncRNA upstream 288933 35370106 ~ 35370480 (-) True G89212
TU111340 lncRNA upstream 323884 35405057 ~ 35405340 (-) True G89240
TU111347 lncRNA upstream 373394 35454567 ~ 35455198 (-) True G89247
TU111367 lncRNA upstream 630290 35711463 ~ 35711716 (-) True G89264
TU111375 lncRNA upstream 736193 35817366 ~ 35817621 (-) True G89272
AMCG00021877 mRNA downstream 259194 34811156 ~ 34820379 (-) True AMCG00021877
AMCG00021879 mRNA downstream 269971 34790268 ~ 34809602 (-) True AMCG00021879
AMCG00021878 mRNA downstream 294861 34766852 ~ 34784712 (-) True AMCG00021878
AMCG00021870 mRNA downstream 321946 34745703 ~ 34757627 (-) True AMCG00021870
AMCG00021868 mRNA downstream 691906 34378701 ~ 34387667 (-) True AMCG00021868
AMCG00021885 mRNA upstream 230116 35311289 ~ 35351633 (-) True AMCG00021885
AMCG00021889 mRNA upstream 587131 35668304 ~ 35672523 (-) True AMCG00021889
AMCG00021888 mRNA upstream 646246 35727419 ~ 35740510 (-) True AMCG00021888
AMCG00021890 mRNA upstream 717017 35798190 ~ 35799107 (-) True AMCG00021890
AMCG00021887 mRNA upstream 847418 35928591 ~ 35950291 (-) True AMCG00021887
TU111038 other downstream 699278 34346988 ~ 34380295 (-) False G89004
TU111040 other downstream 728448 34346988 ~ 34351125 (-) True G89004
TU110795 other downstream 3010109 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 3947388 31129583 ~ 31132185 (-) False AMCG00021830
TU110615 other downstream 4191361 30877848 ~ 30888212 (-) True AMCG00021820
TU111315 other upstream 293843 35375016 ~ 35395771 (-) True G89217
TU111504 other upstream 862579 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 1333866 36415039 ~ 36438350 (-) False AMCG00021895
TU111619 other upstream 1597354 36678527 ~ 36687642 (-) False AMCG00021897
TU111771 other upstream 3180214 38261387 ~ 38283855 (-) True G89598

Expression Profile