RNA id: TU111347


Basic Information

Item Value
RNA id TU111347
length 610
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G89247
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 35454567 ~ 35455198 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gctgagggaaggaggttctcacccaagatttgacggtacatggccccgtcctcgtccctttgatgcgttGCAGTTGttctgtccccttagcagaaaaacaccttcatgtttgacggtggggatggtgttcttggggtcattcctcctcctccaaacacggcgagttgagttgatgccaaagagctcgaacactttcacccagttcattggcaaacttcagacaggcctgtacatgtgctttcttgagcagggggaccttgcgggcgctgcaggatttcagtccttcacagcgtagtgtgttaccaattgttttcttggtgactatggtcccagctgccttgagatcattaacaagatcctcccatgtagttctgggctgattcctcaccgttctcatgatcattgaaactccacgaggtgagatcttgcatggagccccagaccgagggagactgacagttattttgtgtttcttccatttgcgaataatcgcaccaactgttgtcaccttctcacaaGCTGCTCAGCCCCCCCTGGAATTTTGATGAGTTACTTAATcattcaaggaagaaaataaaacaaacactcccCACCCgctcttaccggagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111340 lncRNA downstream 49227 35405057 ~ 35405340 (-) True G89240
TU111310 lncRNA downstream 84087 35370106 ~ 35370480 (-) True G89212
TU111206 lncRNA downstream 373394 35079573 ~ 35081173 (-) True G89130
TU111049 lncRNA downstream 1034288 34419760 ~ 34420279 (-) True G89011
TU111045 lncRNA downstream 1066557 34387254 ~ 34388010 (-) False AMCG00021868
TU111367 lncRNA upstream 256265 35711463 ~ 35711716 (-) True G89264
TU111375 lncRNA upstream 362168 35817366 ~ 35817621 (-) True G89272
TU111491 lncRNA upstream 396838 35852036 ~ 35893714 (-) True G89359
TU111511 lncRNA upstream 511921 35967119 ~ 35985261 (-) True G89373
TU111572 lncRNA upstream 1042996 36498194 ~ 36501828 (-) True G89428
AMCG00021885 mRNA downstream 102934 35311289 ~ 35351633 (-) True AMCG00021885
AMCG00021877 mRNA downstream 634188 34811156 ~ 34820379 (-) True AMCG00021877
AMCG00021879 mRNA downstream 644965 34790268 ~ 34809602 (-) True AMCG00021879
AMCG00021878 mRNA downstream 669855 34766852 ~ 34784712 (-) True AMCG00021878
AMCG00021870 mRNA downstream 696940 34745703 ~ 34757627 (-) True AMCG00021870
AMCG00021889 mRNA upstream 213106 35668304 ~ 35672523 (-) True AMCG00021889
AMCG00021888 mRNA upstream 272221 35727419 ~ 35740510 (-) True AMCG00021888
AMCG00021890 mRNA upstream 342992 35798190 ~ 35799107 (-) True AMCG00021890
AMCG00021887 mRNA upstream 473393 35928591 ~ 35950291 (-) True AMCG00021887
AMCG00021891 mRNA upstream 572082 36027280 ~ 36030435 (-) True AMCG00021891
TU111315 other downstream 58796 35375016 ~ 35395771 (-) True G89217
TU111038 other downstream 1074272 34346988 ~ 34380295 (-) False G89004
TU111040 other downstream 1103442 34346988 ~ 34351125 (-) True G89004
TU110795 other downstream 3385103 32063385 ~ 32069464 (-) True AMCG00021849
TU110664 other downstream 4322382 31129583 ~ 31132185 (-) False AMCG00021830
TU111504 other upstream 488554 35943752 ~ 35946984 (-) True G89368
TU111563 other upstream 959841 36415039 ~ 36438350 (-) False AMCG00021895
TU111619 other upstream 1223329 36678527 ~ 36687642 (-) False AMCG00021897
TU111771 other upstream 2806189 38261387 ~ 38283855 (-) True G89598
TU111784 other upstream 2940373 38395571 ~ 38397755 (-) True G89611

Expression Profile