RNA id: TU111391



Basic Information


Item Value
RNA id TU111391
length 710
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G89283
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 35892163 ~ 35893862 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


cactcaagaaccaatcacctatgatCTATCAGGCATTAAAAGGCAACGCACAGcgactttctctctctctcacctgaaccagtaactcactgccacagctcaacctgtagctctgtcaCCAGAAACagaaccggaaaccaactaagtctttgccggcaacagaagagttgaACTGGgggaaggagattgagccgtacaaagaattctttaaagaactttattaagtaaagaactttagaacctgcgcctgcccgcctgtgcccacctgatcagtggagttcatacagctggacaattgactaagtcaactgtaatacagaagtattcagtcatttaaatagctattgagtcttaagaaacttgacccttggaaatgaACAGGGCCGTTTCCTcaaagtaactacggtggaaaacactgcttacaaagaagacatcctgtgcacaacattggagccttcaaaccagtggaaaatctgtttggaaaagactctacttttgCGAAAcccccaacttccaggagcatcgactgaagtggaagttattggacaaagccgaactggactgcctttgttccaaaccgtgtgtttttatttgagcccgaagacagagaggcctctatGCGACGAaAGTGGTGGAGAATGTGTGCAACTTTCTTGAGAAATACCCACCGAGCAAGCATGGAGAGTCTCATTCAGCAACTGGTTCAGTAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111320 lncRNA upstream 485179 35406710 ~ 35406984 (+) True G89222
TU111048 lncRNA upstream 1472106 34419791 ~ 34420057 (+) True G89010
TU111044 lncRNA upstream 1504491 34387254 ~ 34387672 (+) True G89006
TU111010 lncRNA upstream 1505961 34383959 ~ 34386202 (+) True G88981
TU111009 lncRNA upstream 1518498 34369970 ~ 34373665 (+) False G88980
TU111393 lncRNA downstream 6781 35900643 ~ 35901176 (+) True G89285
TU111411 lncRNA downstream 69896 35963758 ~ 35970466 (+) True G89298
TU111455 lncRNA downstream 353197 36247059 ~ 36248421 (+) True G89329
TU111470 lncRNA downstream 520782 36414644 ~ 36415841 (+) True G89342
TU111575 lncRNA downstream 617327 36511189 ~ 36511500 (+) True G89430
AMCG00021894 mRNA upstream 4910 35864749 ~ 35887253 (+) True AMCG00021894
AMCG00021886 mRNA upstream 298825 35579959 ~ 35593338 (+) True AMCG00021886
AMCG00021884 mRNA upstream 674032 35200245 ~ 35218131 (+) True AMCG00021884
AMCG00021880 mRNA upstream 716395 35108615 ~ 35175768 (+) True AMCG00021880
AMCG00021882 mRNA upstream 805659 35077101 ~ 35086504 (+) True AMCG00021882
AMCG00021893 mRNA downstream 90193 35984055 ~ 36013655 (+) True AMCG00021893
AMCG00021899 mRNA downstream 571924 36465786 ~ 36501828 (+) True AMCG00021899
AMCG00021900 mRNA downstream 756370 36650232 ~ 36657721 (+) False AMCG00021900
AMCG00021911 mRNA downstream 2226462 38120324 ~ 38121572 (+) True AMCG00021911
AMCG00021910 mRNA downstream 2243260 38137122 ~ 38142159 (+) True AMCG00021910
TU111226 other upstream 628626 35211133 ~ 35263537 (+) True G89142
TU111156 other upstream 850875 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other upstream 850875 35037839 ~ 35041288 (+) False AMCG00021881
TU110433 other upstream 5497942 30267402 ~ 30394221 (+) False AMCG00021803
TU111415 other downstream 70709 35964571 ~ 35967384 (+) False G89299
TU111425 other downstream 70709 35964571 ~ 35967384 (+) True G89299
TU111747 other downstream 2227395 38121257 ~ 38151049 (+) True G89578
TU111748 other downstream 2227395 38121257 ~ 38151049 (+) False G89578
TU111805 other downstream 2924010 38817872 ~ 38822685 (+) True G89632

Expression Profile