RNA id: TU111511


Basic Information

Item Value
RNA id TU111511
length 1016
lncRNA type inter_gene
GC content 0.37
exon number 3
gene id G89373
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 35967119 ~ 35985261 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctaataatattataattataatctattcaaacaaaatcaatggaaataatgttttagttCTTATTGTTACTAAAATAAAAGACGAAGCTTAATAATTTTACAATCCTGCCATCTGACTTCTGCGAACATGTCTGAAAGTTGATctgataaatgtttatttgtcgTTAACAGCCTGGCACTCTTCAGTgcaccaaaaaactaaataatatcaaatcaaacaaatatgcaaacagATGTTGAAAACTTAAGGTGGTCTCACATCACTGAAGTCAGTTcagcattaaataaaataccaaagaCGCAACAGTCTCAGTAAAACTCACGGCATTGTGATACAATTAAGTTACacgagaaaaaaaatgtttgaaatgtttttattttttatttttttttattaaatgctgCTCACCAGGTGGGCAAGTAATTAATATTTGTCACTCGCCCTGCTTTCAAAATACTCGCCAGGGGCAGGCAGGCGACCTTAACTTACACCCctgaataaaacacataaaaacttAAGCATACATGTAAAAAGAGATTTATAATGTTAGGAGGAAGGTCACATGAACTTTGTGAATCAACTCCCCAAAATAAAGGTTTTACCTCTGGAGCTGACGAAGGAAGTGTTCCAATAGTTGCTGTCGAGGTGTACACTCATTTTCTTGCTGAGTCCTGCAAGCTCTCACTGGCCTGTCTGCTTGTTGTTCCACTTCCACTTTAACTCCTGGATCCAAATCATCTACAGCTCCTTCAATGTCACAaacttctctctctcgtttcctcttcttctcttcctccttccttctcctcctctcctcatCATCcatatgcttttctttctccttttcagatttctttttcttctttttcttcttgtctTTGTGGCGTTCCCGCTCATGGTCTGATCGGTCATCGTAGTAGCTAGAGTCATGTCCGGAGCCTGAGAGTTCAGTGATCTCACTTCCCCCAACTTTCAGAACGAGTTTTAGAGGTTTATCCAATGGTTTGTCTTcata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111491 lncRNA downstream 73405 35852036 ~ 35893714 (-) True G89359
TU111375 lncRNA downstream 149498 35817366 ~ 35817621 (-) True G89272
TU111367 lncRNA downstream 255403 35711463 ~ 35711716 (-) True G89264
TU111347 lncRNA downstream 511921 35454567 ~ 35455198 (-) True G89247
TU111340 lncRNA downstream 561779 35405057 ~ 35405340 (-) True G89240
TU111572 lncRNA upstream 512933 36498194 ~ 36501828 (-) True G89428
TU111576 lncRNA upstream 526338 36511599 ~ 36511931 (-) True G89431
TU111584 lncRNA upstream 539248 36524509 ~ 36537711 (-) True AMCG00021896
TU111707 lncRNA upstream 1273282 37258543 ~ 37258818 (-) True G89539
TU111717 lncRNA upstream 1481520 37466781 ~ 37467591 (-) True G89549
AMCG00021887 mRNA downstream 16828 35928591 ~ 35950291 (-) True AMCG00021887
AMCG00021890 mRNA downstream 168012 35798190 ~ 35799107 (-) True AMCG00021890
AMCG00021888 mRNA downstream 226609 35727419 ~ 35740510 (-) True AMCG00021888
AMCG00021889 mRNA downstream 294596 35668304 ~ 35672523 (-) True AMCG00021889
AMCG00021885 mRNA downstream 615486 35311289 ~ 35351633 (-) True AMCG00021885
AMCG00021891 mRNA upstream 42019 36027280 ~ 36030435 (-) True AMCG00021891
AMCG00021892 mRNA upstream 69713 36054974 ~ 36058550 (-) True AMCG00021892
AMCG00021895 mRNA upstream 429618 36414879 ~ 36417745 (-) True AMCG00021895
AMCG00021896 mRNA upstream 539625 36524886 ~ 36537718 (-) False AMCG00021896
AMCG00021898 mRNA upstream 637270 36622531 ~ 36625236 (-) True AMCG00021898
TU111504 other downstream 20135 35943752 ~ 35946984 (-) True G89368
TU111315 other downstream 571348 35375016 ~ 35395771 (-) True G89217
TU111038 other downstream 1586824 34346988 ~ 34380295 (-) False G89004
TU111040 other downstream 1615994 34346988 ~ 34351125 (-) True G89004
TU110795 other downstream 3897655 32063385 ~ 32069464 (-) True AMCG00021849
TU111563 other upstream 429778 36415039 ~ 36438350 (-) False AMCG00021895
TU111619 other upstream 693266 36678527 ~ 36687642 (-) False AMCG00021897
TU111771 other upstream 2276126 38261387 ~ 38283855 (-) True G89598
TU111784 other upstream 2410310 38395571 ~ 38397755 (-) True G89611
TU111863 other upstream 3270618 39255879 ~ 39259804 (-) False AMCG00021918

Expression Profile