RNA id: TU111575


Basic Information

Item Value
RNA id TU111575
length 312
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G89430
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 36511189 ~ 36511500 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagaaaaaatgtatttagttccGCAGAAACATATGGACAGAATTAGAGGACTTTCCAGTTGAGCACGACATCCGAATAATAGCCACGTATAAATTGGATGGGGAAATGAAACATATTCTGCAAAGCTCTCATTTGGGAGAATAAGAAAAAGCTTAACGCTACGCACAAGTGTTGCAGAGGTACTTGACCCTGACGCGTCAGGCGGAATCAGAAAAGGCCGTGTTAACTTTGCAGATGCCTGATACGGACACCCCGGGTCAAATAACACCTACAGAGCCTGTTTTTGATGATATTTTAGAAGCTATACCACag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111470 lncRNA upstream 95348 36414644 ~ 36415841 (+) True G89342
TU111455 lncRNA upstream 262768 36247059 ~ 36248421 (+) True G89329
TU111386 lncRNA upstream 315587 35860916 ~ 36195602 (+) True G89280
TU111590 lncRNA downstream 50507 36562007 ~ 36562413 (+) True G89443
TU111595 lncRNA downstream 84219 36595719 ~ 36615546 (+) True G89448
TU111601 lncRNA downstream 143456 36654956 ~ 36659244 (+) True AMCG00021900
TU111620 lncRNA downstream 212612 36724112 ~ 36725391 (+) True G89465
TU111636 lncRNA downstream 336510 36848010 ~ 36855391 (+) True G89480
AMCG00021899 mRNA upstream 9361 36465786 ~ 36501828 (+) True AMCG00021899
AMCG00021893 mRNA upstream 497534 35984055 ~ 36013655 (+) True AMCG00021893
AMCG00021894 mRNA upstream 623936 35864749 ~ 35887253 (+) True AMCG00021894
AMCG00021886 mRNA upstream 917851 35579959 ~ 35593338 (+) True AMCG00021886
AMCG00021884 mRNA upstream 1293058 35200245 ~ 35218131 (+) True AMCG00021884
AMCG00021900 mRNA downstream 138732 36650232 ~ 36657721 (+) False AMCG00021900
AMCG00021911 mRNA downstream 1608824 38120324 ~ 38121572 (+) True AMCG00021911
AMCG00021910 mRNA downstream 1625622 38137122 ~ 38142159 (+) True AMCG00021910
AMCG00021912 mRNA downstream 1884306 38395806 ~ 38397674 (+) True AMCG00021912
AMCG00021914 mRNA downstream 2344326 38855826 ~ 38865619 (+) True AMCG00021914
TU111415 other upstream 543805 35964571 ~ 35967384 (+) False G89299
TU111425 other upstream 543805 35964571 ~ 35967384 (+) True G89299
TU111226 other upstream 1247652 35211133 ~ 35263537 (+) True G89142
TU111156 other upstream 1469901 34926553 ~ 35041288 (+) False AMCG00021881
TU111747 other downstream 1609757 38121257 ~ 38151049 (+) True G89578
TU111748 other downstream 1609757 38121257 ~ 38151049 (+) False G89578
TU111805 other downstream 2306372 38817872 ~ 38822685 (+) True G89632
TU111914 other downstream 2889024 39400524 ~ 39408261 (+) True G89728

Expression Profile