RNA id: TU111590



Basic Information


Item Value
RNA id TU111590
length 407
lncRNA type inter_gene
GC content 0.21
exon number 1
gene id G89443
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 36562007 ~ 36562413 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tcacattttacaaaattaaaaacaattccaattttaatacttatgattaaaatcgtttaaaatatcagttcttaaaatcacttaaaatttttaaaatctttgtgatttttttaacaaaactaaaacaataaactttaaaataaacgtgctcaaatcaaataaacaaaacgtgataaaagcaaaaactgcacaccaacaaaagagtcaattacattgaaaataacagaaaatgcattagacaaattaaaaaaacaattaaaaagtaaaaataaaaaacaaacaaaaaaagtctaatgcattttaaattaaacccaaaaacggtcaatgtatttgacaaaaaaattataacaaaacTATACCTAAAAAGCCctaaacaatgtgatttaaaaacatctaaatctttaaaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111575 lncRNA upstream 50507 36511189 ~ 36511500 (+) True G89430
TU111470 lncRNA upstream 146166 36414644 ~ 36415841 (+) True G89342
TU111455 lncRNA upstream 313586 36247059 ~ 36248421 (+) True G89329
TU111411 lncRNA upstream 591541 35963758 ~ 35970466 (+) True G89298
TU111393 lncRNA upstream 660831 35900643 ~ 35901176 (+) True G89285
TU111595 lncRNA downstream 33306 36595719 ~ 36615546 (+) True G89448
TU111601 lncRNA downstream 92543 36654956 ~ 36659244 (+) True AMCG00021900
TU111620 lncRNA downstream 161699 36724112 ~ 36725391 (+) True G89465
TU111636 lncRNA downstream 285597 36848010 ~ 36855391 (+) True G89480
TU111678 lncRNA downstream 446061 37008474 ~ 37010542 (+) True G89516
AMCG00021899 mRNA upstream 60179 36465786 ~ 36501828 (+) True AMCG00021899
AMCG00021893 mRNA upstream 548352 35984055 ~ 36013655 (+) True AMCG00021893
AMCG00021894 mRNA upstream 674754 35864749 ~ 35887253 (+) True AMCG00021894
AMCG00021886 mRNA upstream 968669 35579959 ~ 35593338 (+) True AMCG00021886
AMCG00021884 mRNA upstream 1343876 35200245 ~ 35218131 (+) True AMCG00021884
AMCG00021900 mRNA downstream 87819 36650232 ~ 36657721 (+) False AMCG00021900
AMCG00021911 mRNA downstream 1557911 38120324 ~ 38121572 (+) True AMCG00021911
AMCG00021910 mRNA downstream 1574709 38137122 ~ 38142159 (+) True AMCG00021910
AMCG00021912 mRNA downstream 1833393 38395806 ~ 38397674 (+) True AMCG00021912
AMCG00021914 mRNA downstream 2293413 38855826 ~ 38865619 (+) True AMCG00021914
TU111415 other upstream 594623 35964571 ~ 35967384 (+) False G89299
TU111425 other upstream 594623 35964571 ~ 35967384 (+) True G89299
TU111226 other upstream 1298470 35211133 ~ 35263537 (+) True G89142
TU111156 other upstream 1520719 34926553 ~ 35041288 (+) False AMCG00021881
TU111747 other downstream 1558844 38121257 ~ 38151049 (+) True G89578
TU111748 other downstream 1558844 38121257 ~ 38151049 (+) False G89578
TU111805 other downstream 2255459 38817872 ~ 38822685 (+) True G89632
TU111914 other downstream 2838111 39400524 ~ 39408261 (+) True G89728

Expression Profile