RNA id: TU111692



Basic Information


Item Value
RNA id TU111692
length 312
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G89527
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 37117552 ~ 37208252 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggcccgtctggcaccaacaaccatgccacgctcaaaattgcttaaatcacctttctttcccattcagacattcagtttggagttcaggagattgtcttgaccaggaccacacccctaaatgcattgaagcaactgccatgtgattggttggttagataattgcattaatgagaaattgaacaggtgttcctaataatcctttaggtgagtgtatgtgtGGGTGTTACAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111678 lncRNA upstream 107010 37008474 ~ 37010542 (+) True G89516
TU111636 lncRNA upstream 262161 36848010 ~ 36855391 (+) True G89480
TU111620 lncRNA upstream 392161 36724112 ~ 36725391 (+) True G89465
TU111601 lncRNA upstream 458308 36654956 ~ 36659244 (+) True AMCG00021900
TU111595 lncRNA upstream 502006 36595719 ~ 36615546 (+) True G89448
TU111706 lncRNA downstream 50309 37258561 ~ 37258835 (+) True G89538
TU111720 lncRNA downstream 356722 37564974 ~ 37565215 (+) True G89552
TU111722 lncRNA downstream 394185 37602437 ~ 37602664 (+) True G89554
TU111739 lncRNA downstream 809052 38017304 ~ 38054529 (+) False G89571
TU111740 lncRNA downstream 809052 38017304 ~ 38059534 (+) True G89571
AMCG00021900 mRNA upstream 459831 36650232 ~ 36657721 (+) False AMCG00021900
AMCG00021899 mRNA upstream 615724 36465786 ~ 36501828 (+) True AMCG00021899
AMCG00021893 mRNA upstream 1103897 35984055 ~ 36013655 (+) True AMCG00021893
AMCG00021894 mRNA upstream 1230299 35864749 ~ 35887253 (+) True AMCG00021894
AMCG00021886 mRNA upstream 1524214 35579959 ~ 35593338 (+) True AMCG00021886
AMCG00021911 mRNA downstream 912072 38120324 ~ 38121572 (+) True AMCG00021911
AMCG00021910 mRNA downstream 928870 38137122 ~ 38142159 (+) True AMCG00021910
AMCG00021912 mRNA downstream 1187554 38395806 ~ 38397674 (+) True AMCG00021912
AMCG00021914 mRNA downstream 1647574 38855826 ~ 38865619 (+) True AMCG00021914
AMCG00021915 mRNA downstream 2150466 39358718 ~ 39369622 (+) True AMCG00021915
TU111415 other upstream 1150168 35964571 ~ 35967384 (+) False G89299
TU111425 other upstream 1150168 35964571 ~ 35967384 (+) True G89299
TU111226 other upstream 1854015 35211133 ~ 35263537 (+) True G89142
TU111156 other upstream 2076264 34926553 ~ 35041288 (+) False AMCG00021881
TU111747 other downstream 913005 38121257 ~ 38151049 (+) True G89578
TU111748 other downstream 913005 38121257 ~ 38151049 (+) False G89578
TU111805 other downstream 1609620 38817872 ~ 38822685 (+) True G89632
TU111914 other downstream 2192272 39400524 ~ 39408261 (+) True G89728

Expression Profile