RNA id: TU111717


Basic Information

Item Value
RNA id TU111717
length 811
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G89549
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 37466781 ~ 37467591 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAGTGAATCATCctatattctaaaatggcctaaAACTTAGGGCCcgattaattaaatcaaaaatgttcacaagcTGCTAACAAGAAAAGTTGTGGGTGAGtctagagccctgcatttcagcctgAGCCTGACGGGGCCCCGACTTCTTTACACCCCTCAGGCTGGGCTTCAGGCCAATTTTCACTTCATAGTTCACACGCGGGCTGGGCATTGGGactgttttaggctcctcctcctgtttatattttggacattaattaattaattaaaagaaactatgagaatttgatgatggtaaaacaaacatagaaagatgTTATATAATCTATCACACTGACATGCGtgacacagtctgctcacgcatgcacacacacgcacacaggtttcccacggACAACACGAGAGCATGCTACCGTGCCTGTGCAGACTGGCTCGCACGGTGTTTAGTGTCCAGCGCAGCTGGAAGAGGACAGAAGAAAGCAGGACTGGACTGAGACCGTCCACTGTGGATGATGTGCTTTTTCTCCATGATGCTCTGTaagagactgttcttctggctcTAGCTatgttaagactaggaggcttgttttttgtttgattggactttattgtcattagtctaactgttggaaactattggaaatgagaatggccatgttctgtggtgacaccttgatttttgaggtaaTGTAAGATaacctgtgtgttttattgtatttgtttagatcGTACAGCCTGTTAGTTCATTTTTCCTCACTCCATTGCGAGCAGTAGAGCAGCCTggtcagcttgtcaaaaatgccttttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111707 lncRNA downstream 207963 37258543 ~ 37258818 (-) True G89539
TU111584 lncRNA downstream 929070 36524509 ~ 36537711 (-) True AMCG00021896
TU111576 lncRNA downstream 954850 36511599 ~ 36511931 (-) True G89431
TU111572 lncRNA downstream 964953 36498194 ~ 36501828 (-) True G89428
TU111511 lncRNA downstream 1481520 35967119 ~ 35985261 (-) True G89373
TU111721 lncRNA upstream 97383 37564974 ~ 37565215 (-) True G89553
TU111727 lncRNA upstream 146806 37614397 ~ 37614596 (-) True G89559
TU111730 lncRNA upstream 293226 37760817 ~ 37761021 (-) True G89562
TU111733 lncRNA upstream 350971 37818562 ~ 37818769 (-) True G89565
TU111734 lncRNA upstream 425203 37892794 ~ 37893012 (-) True G89566
AMCG00021906 mRNA downstream 231940 37212616 ~ 37234841 (-) True AMCG00021906
AMCG00021905 mRNA downstream 295402 37091198 ~ 37171379 (-) True AMCG00021905
AMCG00021904 mRNA downstream 467141 36992851 ~ 36999640 (-) True AMCG00021904
AMCG00021903 mRNA downstream 491665 36944033 ~ 36975116 (-) True AMCG00021903
AMCG00021901 mRNA downstream 592571 36867843 ~ 36874210 (-) True AMCG00021901
AMCG00021907 mRNA upstream 490164 37957755 ~ 37958533 (-) True AMCG00021907
AMCG00021909 mRNA upstream 712489 38180080 ~ 38224604 (-) True AMCG00021909
AMCG00021908 mRNA upstream 770547 38238138 ~ 38245037 (-) True AMCG00021908
AMCG00021913 mRNA upstream 1351820 38819411 ~ 38826295 (-) True AMCG00021913
AMCG00021921 mRNA upstream 1471016 38938607 ~ 38945501 (-) True AMCG00021921
TU111619 other downstream 779139 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 1028431 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 1519797 35943752 ~ 35946984 (-) True G89368
TU111315 other downstream 2071010 35375016 ~ 35395771 (-) True G89217
TU111040 other downstream 3115656 34346988 ~ 34351125 (-) True G89004
TU111771 other upstream 793796 38261387 ~ 38283855 (-) True G89598
TU111784 other upstream 927980 38395571 ~ 38397755 (-) True G89611
TU111863 other upstream 1788288 39255879 ~ 39259804 (-) False AMCG00021918
TU111960 other upstream 2018242 39485833 ~ 39486288 (-) True G89765

Expression Profile