RNA id: TU111721



Basic Information


Item Value
RNA id TU111721
length 242
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G89553
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 37564974 ~ 37565215 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tccaatcttgtaatcagtcattcagcctatttaaatggaggaaagtagtcactgtgtcgtttggtatcattgtgtgcaccacactgaacatggaccagagaaagcaaaggagagagttgtctgaggagatcagaaagaaaataatagacaagcatgttAAAGGCAAAGGCTACaggaccatctccaagcagcttgatgttcctgtgacaacagttgcaaatattattaagaagttcaaggtc

Function


GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko04975 Fat digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111717 lncRNA downstream 97383 37466781 ~ 37467591 (-) True G89549
TU111707 lncRNA downstream 306156 37258543 ~ 37258818 (-) True G89539
TU111584 lncRNA downstream 1027263 36524509 ~ 36537711 (-) True AMCG00021896
TU111576 lncRNA downstream 1053043 36511599 ~ 36511931 (-) True G89431
TU111572 lncRNA downstream 1063146 36498194 ~ 36501828 (-) True G89428
TU111727 lncRNA upstream 49182 37614397 ~ 37614596 (-) True G89559
TU111730 lncRNA upstream 195602 37760817 ~ 37761021 (-) True G89562
TU111733 lncRNA upstream 253347 37818562 ~ 37818769 (-) True G89565
TU111734 lncRNA upstream 327579 37892794 ~ 37893012 (-) True G89566
TU111735 lncRNA upstream 377132 37942347 ~ 37942680 (-) True G89567
AMCG00021906 mRNA downstream 330133 37212616 ~ 37234841 (-) True AMCG00021906
AMCG00021905 mRNA downstream 393595 37091198 ~ 37171379 (-) True AMCG00021905
AMCG00021904 mRNA downstream 565334 36992851 ~ 36999640 (-) True AMCG00021904
AMCG00021903 mRNA downstream 589858 36944033 ~ 36975116 (-) True AMCG00021903
AMCG00021901 mRNA downstream 690764 36867843 ~ 36874210 (-) True AMCG00021901
AMCG00021907 mRNA upstream 392540 37957755 ~ 37958533 (-) True AMCG00021907
AMCG00021909 mRNA upstream 614865 38180080 ~ 38224604 (-) True AMCG00021909
AMCG00021908 mRNA upstream 672923 38238138 ~ 38245037 (-) True AMCG00021908
AMCG00021913 mRNA upstream 1254196 38819411 ~ 38826295 (-) True AMCG00021913
AMCG00021921 mRNA upstream 1373392 38938607 ~ 38945501 (-) True AMCG00021921
TU111619 other downstream 877332 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 1126624 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 1617990 35943752 ~ 35946984 (-) True G89368
TU111315 other downstream 2169203 35375016 ~ 35395771 (-) True G89217
TU111040 other downstream 3213849 34346988 ~ 34351125 (-) True G89004
TU111771 other upstream 696172 38261387 ~ 38283855 (-) True G89598
TU111784 other upstream 830356 38395571 ~ 38397755 (-) True G89611
TU111863 other upstream 1690664 39255879 ~ 39259804 (-) False AMCG00021918
TU111960 other upstream 1920618 39485833 ~ 39486288 (-) True G89765

Expression Profile