RNA id: TU111747


Basic Information

Item Value
RNA id TU111747
length 2311
RNA type TUCP
GC content 0.41
exon number 6
gene id G89578
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38121257 ~ 38151049 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGGCTCCAACTTCATAGATAACCCTTGTTATTTGCAGGCCATGTAGAGGCAGATGTGAACCAGAACAATGGGACCTCCACTGAGAAGACAGCGGTGACAGACTCCAAGGGTGCAGAAGGCCCAAAGAATGCCTGGAGCATTGCCAACACAGCTGACCATTCTGCAAATCGCCCCCACTTGATCCGCCTCTTTTCCCGAGATGCTCCAGGCCGTGAGGACAACACCTTCAAAGATCGCCCTTCTGAGTCCGATGAGCTTCAGACCATCCAGGAAAACAGTGGGACAGGTTCTGAGTGTTCGGATTGTACTGAATAAGTGGAAGACTAGTCCTCTCAGGGCCACCGCACATCACAAATAATGGCAACTGCGAGCACCTCGGACCAAGCTAGACGCAGCTCTAGACGGCAAAGGGACACTGGTCTATTGGACCAGCTTGGAAAATTCTTTGGAGGGGAAAGAGAGGGGAGCAGGAAGGGAAAGGTATCTTCAATGAGGAGCAGCCATTTGGGTTCTTCACCTCAGAGGACTCCTCAGCAGTCAGGAGCCCGTGGCAGACCTGGAGATGACAACCCTGTAGTGCACTTCTTTAAAACCATTGTGTCCCCTACTCCTCCACCAAAACCAAAGGGGAGAGGATTATCCCTCGGGAGATTAGGCTGGGGAACTGATGGACAGAAGCAGCCAACACAGGCAAGATTTCTCGAGGCAACAAGATCTCCTCACAAAGGCCACAAGGATCGAAGAGGTGATGGCCAGGGAACTCTCTCCAAAATCTTCAAACTGGGTGGAAGAGACAGCCGATCTGGATCCCCTTCCAAACGCTGAACTAGCGGAGTCCACTTTcttttaatgaagaaaacagttcataatgaaaaataacGACAATAACCATTATGAAGAAAGAAATGTCTCTGCTTTATACATTAACTCCCTGCCCGGcctaaaatgcattaatatgaACTTGCCGTGTTTTTTAGATAGCATCACAATCTTTCTACTTATTTTCTGCTGAGATTGTGCATGCAGTCATCATCCACGAGAACTGTTGTCGATGGTCTCCACACAAGCTCTGCCTGAAGAGGATTACTTTTTGTTGCTTTAGATTTTTAGTTTGTCTTCAGAACTAATATGGGCTGCATAAGACTgagaattatatttatttatttttatttgagggGGAGGCATTTTCACCTTTCATTAAATTGTGTTCAGTTGCTCTGGTGTGAATAACCAAGATGCAACTCTCTTCAGTGTTTTGTCCCCCTCACAAAGACAGCCAGTTAACATGAATCACCTTTGTTGCTTTCTGCAATGTATTCACTTTCATAAATACCCATAAGTGGTTATGTTATGCCTTTGTTTGTTCACATGACCAAAAGTCTctaagatgttttatttttcctattatttttaattatatatatatattattgaaggCAAAGAGTATGCCACTCTGTATTGATAAGGGGCTTGTCTGGAGTGCGTAGATTTCTGAATTTAAGAGTGGACTGTGGATGTAAGCTTTGAGGGGAAAAACATCGTTAAGCTACTGTGAAGGTGACAACTTCTATATCTATCTTAATTGTAAAGTGCATTCTAACTGGActacatatataatacactaataagtgttgatgttttaatttcattttgcccccttttttttctccatagaacgtttaaataatttaatttagataCTAAAATCATAACGGGTAtggtgctgtttttttatccagccatatttaaaacacagactgaATGCTCTTCtgaattgcacttttttttttactactgaaattaaattagtcCCATATACCTTGGATTGTTGTCTTCTTGATTTATCTTACCTGCTTCCAATTTATGTAAGTACTGCAAAAGATAAACAGCTAGCCATTTTGTATTGACCAACAATAGTGTGCTGTGACCAAATAGATGTTCTGTCCTCTGTTTAACTACTACCTAAACTATGTCTTTCGTTGGTACCCCTAGTGTATCCAAACAAAGGTAAAGAAGACAAGCACACGTTATAGAAAAGAATGTTATAGAAAGTCGTGGAAAGtcctgaggaaaaaaataaagcctggtTGATGAATTGCATGAACTCTGCTGTGATGCTGCCGATATTCTTTTTTCCAGAAGTTTTCTCGGCATGCTAAAATAAGCTCCCATAACGTGTAACGCTCCTGTGTCCCCACCCACCTTTCCCAATTGTGCTTGTAGTTTCTTTgaatgaatgtaaattaaaactttgaaacattattgtaaatgtcaaacaaataaaaaacttgcCTTTTAACGTGGTTAAAG

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111740 lncRNA upstream 61723 38017304 ~ 38059534 (+) True G89571
TU111739 lncRNA upstream 66728 38017304 ~ 38054529 (+) False G89571
TU111722 lncRNA upstream 518593 37602437 ~ 37602664 (+) True G89554
TU111720 lncRNA upstream 556042 37564974 ~ 37565215 (+) True G89552
TU111706 lncRNA upstream 862422 37258561 ~ 37258835 (+) True G89538
TU111753 lncRNA downstream 3786 38154835 ~ 38155132 (+) True G89583
TU111749 lncRNA downstream 7504 38158553 ~ 38161634 (+) True G89579
TU111770 lncRNA downstream 97865 38248914 ~ 38250240 (+) True G89597
TU111780 lncRNA downstream 231643 38382692 ~ 38382955 (+) True G89607
TU111781 lncRNA downstream 267872 38418921 ~ 38419128 (+) True G89608
AMCG00021900 mRNA upstream 1463536 36650232 ~ 36657721 (+) False AMCG00021900
AMCG00021899 mRNA upstream 1619429 36465786 ~ 36501828 (+) True AMCG00021899
AMCG00021893 mRNA upstream 2107602 35984055 ~ 36013655 (+) True AMCG00021893
AMCG00021894 mRNA upstream 2234004 35864749 ~ 35887253 (+) True AMCG00021894
AMCG00021886 mRNA upstream 2527919 35579959 ~ 35593338 (+) True AMCG00021886
AMCG00021912 mRNA downstream 244757 38395806 ~ 38397674 (+) True AMCG00021912
AMCG00021914 mRNA downstream 704777 38855826 ~ 38865619 (+) True AMCG00021914
AMCG00021915 mRNA downstream 1207669 39358718 ~ 39369622 (+) True AMCG00021915
AMCG00021927 mRNA downstream 1309210 39460259 ~ 39461475 (+) True AMCG00021927
TU111415 other upstream 2153873 35964571 ~ 35967384 (+) False G89299
TU111425 other upstream 2153873 35964571 ~ 35967384 (+) True G89299
TU111226 other upstream 2857720 35211133 ~ 35263537 (+) True G89142
TU111156 other upstream 3079969 34926553 ~ 35041288 (+) False AMCG00021881
TU111160 other upstream 3079969 35037839 ~ 35041288 (+) False AMCG00021881
TU111805 other downstream 666823 38817872 ~ 38822685 (+) True G89632
TU111914 other downstream 1249475 39400524 ~ 39408261 (+) True G89728

Expression Profile