RNA id: TU111749


Basic Information

Item Value
RNA id TU111749
length 3082
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G89579
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38158553 ~ 38161634 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggCAGCAACCAAGACATCTCAATTGATCAGGACCAAGAGGGTGAGGAAGAAGAAAACCGGGAGCTGGACTTAGAGGAAGTGGTCCAGGAGTCTTCAAGCGACTGGCAATGTggaataacaaatgtatttcgATAGCATTTTGCCAAAGAAGCAGAGCACATCACCTGCATCTccatgtagtttattttctttctttttacaaacCTTGTCATACACACAAGTGTGGTTTCCTGTTATTCTCTCTTCTTCAGCAGGGTTTTCTCACAAATATTGTCAGGATGTTAAACAGGGCATGTATATCAGCATAGCAGTGTCCATTGTTGCCCTTTTGTAAAGGCAAGGATTTGATACTAGAACTAGGGGGAACTTGGTTAGTTTAACATTGATACCTcagcatttgtttgtgctggGGTGTGTGATAAATAAGCAGAATTTGAGTGATCTTTCTTCCTTTCCATAGAAATGAAATCTAGTTAGTGTCTCTCAGATGCAGTTtagtacatttcaaatttctATATTGAGAGATGGTCCATTTTAACTGGTACATTTCATCTATTGTATTGCCAAAGTATTGTCTGAAACTGGCTGTTGTCGGATATAATTTATCATCTTAATCCACTGCACAGAAGCAAGGCCACACTCTCGATCTGTCTGAACATATTCTGTTCCACCCATTAACAGCCAAACCAAGCCCTGCTCATAGTATTAAACAAATCATCAAAAATGTCTAGCAGGATGTTAAAGAAAGCCCAGAAAAAAATACCAATGcatttgtatgttaatgatGAACACTGAATTTGTCAGTGTTAATCCTGTTTTACAatggttattttattgtgaGAGCACTGGGAGACAGATTTTGCATTCTGTTGATAAGGGGAAAGTATTACAGAACTTACTTCCTACCACATCCTTTGTGCATGAGGTTGGAAGAAATGTTAGATTTTATTGTCTGGttctaataaaatatttctggaGCATCATTATGGTGCATTTCCGAACTACTTCTATCACTCATTTccctttatttaatgttaagcGCTTGAGTTACCATGGCAAGAATACTCTAAATGTGAACAACGGAGAATCATACCTAACACAAGCACCAGCATAGGTGGTGAAAccattagaaattaaattacagataATGGCAGATGATTTACTACTCCTTCAGTACCCTGACTTCAAACAAGCTGAGCTTATGAGTGCAAATCTCTCTAAGCACAAGCAAATTGCAGAGATGGGTGACAGTTGGCTATGTTTTGAGCTGATTCTCCTTGACGTTAAATCTGTTTTGTTCAGTCAaacattaacttttaaaattcaTTAGTAATTTAAGTTAAACCAGATATTTTCTAGCAAGGAAACTCAGCATTATGAATGCCTTTTGGGGGCAGTGATGCTTAGGCGAGACTAATgttccaaattatttttaatttgttcactTCATGTATCGTCTAGTCGCCATATTTCTCTGAAgtgacataaaatataaaagtcgGGTATCATATAGCAAAGTCATCTCTTAGTATCTGGATCTCAAGTAAACAATATAGCTACATAGCAGCCCTGCAGTATCAGCATCCTCTTTAGAATAGCTTGGAATTGTATCATATACTCCcccacacattattattattattattattatttttatttattggcagacgcccttatccagggcgacttacaacataagtgcaaaaatacagagatacacatacacacaaacacgacaaaactgttttttttttacttctgctTACCATAGAGTGCTTTGCCCATGGTTTTCTAGTAGGATTTAGGTAAAGGACTTCATTGAGcacattaatttaaatccaaACCCCCAGTTTCTGCACTCTATAACCACTTATTGAACATATATAGCAAAAATCACTTAAATTCTTTACAGTGCTATAGTATATATTTGCAACTGCTTGGGTTCCATGTGCTGTCAAGCCGTTGTCATATATAAATAGTGGGGTAATATTATGATAAGAACACATGTTTGGAGCCAGGAATGGGTCTTCACATTCTCATTATTTTCCAAGCAGCCATAGTGTTTGTCTTCTCATCTTATCGTTTAGCAACAGataattgtaaattaatgtCACTGTACACACATTTTTCTAAAGAACTTCCAGTTAGAAGAATAACACAATTTTAAAGCAGTACTTTAATATAGCCCAAACTTGATTTAATGTAACAATCCCAACTCTTAAttattaggaaaataaaaatattataataatgggTGGTGATCTTCAACATTATTTAAGAACTTACAAgtctatgaaaaaaataaattattaactcAGTCTAACCAAAAGATCAACATTAACATGTATTCTCTCCAGAAGCTGGAAATGTATCAATATTAATGCAAAAGGACATTTATTACAGTTGTGCAAGAAAGCTTGAACTCTTTCTACATTCACACAAAGCATCAATTAAGTAAACAGCTAgcaatttatttacaataaaccATCAAcacttctgttctgttttttaaggGTTCTTGTGAAATCTGGAAACAATAGTCTTATGCCTCAGTATTTGCTTTACAGAGGCATCTATATATTTAGCAAATATGAAAAGCTGTTACCACATAAATGTCAGATTTTTTAACTTTGAGGTTTGTCTCCCTCATATATATGTCCAgaaagttttatatatacacacacacacatatatatataatatagaatCATTTTGGTGACATTTGTCATTACGTTGGTATCTCAAGTGCTTTTTTGCAACCTGAGCTAAACATGACTGACATGAAGCTTtctttgaatacatttgttaagTAATGTGCAGAAtgtaaaaatgctgaaaatacCCTTAAAATGATGCCTTTTTCGAAGCTTATTAATGCCTTTCACTAACTCCTTTAATGCCCAATCATGGGACATGGTATTAATATGATtatcttaatattttgttttcataattttaaataattgttgactgtcagtttatttaaaagataCTGAATGCtatattgtttttctgaaatacatGTAGTCATGTTagctttactttaaaatgtatagtttaataTCTTAAATGTCTTATATga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111753 lncRNA upstream 3421 38154835 ~ 38155132 (+) True G89583
TU111740 lncRNA upstream 99019 38017304 ~ 38059534 (+) True G89571
TU111739 lncRNA upstream 104024 38017304 ~ 38054529 (+) False G89571
TU111722 lncRNA upstream 555889 37602437 ~ 37602664 (+) True G89554
TU111720 lncRNA upstream 593338 37564974 ~ 37565215 (+) True G89552
TU111770 lncRNA downstream 87280 38248914 ~ 38250240 (+) True G89597
TU111780 lncRNA downstream 221058 38382692 ~ 38382955 (+) True G89607
TU111781 lncRNA downstream 257287 38418921 ~ 38419128 (+) True G89608
TU111779 lncRNA downstream 262776 38424410 ~ 38425293 (+) True G89606
TU111792 lncRNA downstream 266789 38428423 ~ 38429446 (+) True G89619
AMCG00021910 mRNA upstream 16394 38137122 ~ 38142159 (+) True AMCG00021910
AMCG00021911 mRNA upstream 36981 38120324 ~ 38121572 (+) True AMCG00021911
AMCG00021900 mRNA upstream 1500832 36650232 ~ 36657721 (+) False AMCG00021900
AMCG00021899 mRNA upstream 1656725 36465786 ~ 36501828 (+) True AMCG00021899
AMCG00021893 mRNA upstream 2144898 35984055 ~ 36013655 (+) True AMCG00021893
AMCG00021912 mRNA downstream 234172 38395806 ~ 38397674 (+) True AMCG00021912
AMCG00021914 mRNA downstream 694192 38855826 ~ 38865619 (+) True AMCG00021914
AMCG00021915 mRNA downstream 1197084 39358718 ~ 39369622 (+) True AMCG00021915
AMCG00021927 mRNA downstream 1298625 39460259 ~ 39461475 (+) True AMCG00021927
TU111747 other upstream 7504 38121257 ~ 38151049 (+) True G89578
TU111748 other upstream 7504 38121257 ~ 38151049 (+) False G89578
TU111415 other upstream 2191169 35964571 ~ 35967384 (+) False G89299
TU111425 other upstream 2191169 35964571 ~ 35967384 (+) True G89299
TU111226 other upstream 2895016 35211133 ~ 35263537 (+) True G89142
TU111805 other downstream 656238 38817872 ~ 38822685 (+) True G89632
TU111914 other downstream 1238890 39400524 ~ 39408261 (+) True G89728

Expression Profile