RNA id: TU111754


Basic Information

Item Value
RNA id TU111754
length 1662
lncRNA type inter_gene
GC content 0.36
exon number 3
gene id G89584
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38135260 ~ 38151050 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTTTAACCACGTTAAAAGgcaagttttttatttgtttgacatttacaataatgtttcaaagttttaatttacattcattcAAAGAAACTACAAGCACAATTGGGAAAGGTGGGTGGGGACACAGGAGCGTTACACGTTATGGGAGCTTATTTTAGCATGCCGAGAAAACTTCTGGAAAAAAGAATATCGGCAGCATCACAGCAGAGTTCATGCAATTCATCAaccaggctttatttttttcctcaggaCTTTCCACGACTTTCTATAACATTCTTTTCTATAACGTGTGCTTGTCTTCTTTACCTTTGTTTGGATACACTAGGGGTACCAACGAAAGACATAGTTTAGGTAGTAGTTAAACAGAGGACAGAACATCTATTTGGTCACAGCACACTATTGTTGGTCAATACAAAATGGCTAGCTGTTTATCTTTTGCAGTACTTACATAAATTGGAAGCAGGTAAGATAAATCAAGAAGACAACAATCCAAGGTATATGGgactaatttaatttcagtagtaaaaaaaaaagtgcaattcaGAAGAGCATtcagtctgtgttttaaatatggctggataaaaaaacagcaccaTACCCGTTATGATTTTAGtatctaaattaaattatttaaacgttctatggagaaaaaaaagggggcaaaatgaaattaaaacatcaacacttattagtgtattatatatgtagTCCAGTTAGAATGCACTTTACAATTAAGATAGATATAGAAGTTGTCACCTTCACAGTAGCTTAACGATGTTTTTCCCCTCAAAGCTTACATCCACAGTCCACTCTTAAATTCAGAAATCTACGCACTCCAGACAAGCCCCTTATCAATACAGAGTGGCATACTCTTTGccttcaataatatatatatataattaaaaataataggaaaaataaaacatcttagAGACTTTTGGTCATGTGAACAAACAAAGGCATAACATAACCACTTATGGGTATTTATGAAAGTGAATACATTGCAGAAAGCAACAAAGGTGATTCATGTTAACTGGCTGTCTTTGTGAGGGGGACAAAACACTGAAGAGAGTTGCATCTTGGTTATTCACACCAGAGCAACTGAACACAATTTAATGAAAGGTGAAAATGCCTCCccctcaaataaaaataaataaatataattctcAGTCTTATGCAGCCCATATTAGTTCTGAAGACAAACTAAAAATCTAAAGCAACAAAAAGTAATCCTCTTCAGGCAGAGCTTGTGTGGAGACCATCGACAACAGTTCTCGTGGATGATGACTGCATGCACAATCTCAGCAGAAAATAAGTAGAAAGATTGTGATGCTATCTAAAAAACACGGCAAGTtcatattaatgcattttaggCCGGGCAGGGAGTTAATGTATAAAGCAGAGACATTTCTTTCTTCATAATGGTTATTGTCgttatttttcattatgaactgttttcttcattaaaagAAAGTGGACTCCGCTAGTTCAGCGTTTGGAAGGGGATCCAGATCGGCTGTCTCTTCCACCCTTTTGAAGATTTTGGAGAGAGTTCCCTGGCCATCACCTCTTCGATCCTTGTGGCCTTTGTGAGGAGATCTTGTTGCCTCGAGAAATCTTGCCTGTGTTGGCTGCTTCTGTCCATCAGTTCCCTTTAGTTTTGG

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111738 lncRNA downstream 154846 37980089 ~ 37980414 (-) True G89570
TU111735 lncRNA downstream 192580 37942347 ~ 37942680 (-) True G89567
TU111734 lncRNA downstream 242248 37892794 ~ 37893012 (-) True G89566
TU111733 lncRNA downstream 316491 37818562 ~ 37818769 (-) True G89565
TU111730 lncRNA downstream 374239 37760817 ~ 37761021 (-) True G89562
TU111758 lncRNA upstream 2178 38153228 ~ 38153513 (-) True G89587
TU111759 lncRNA upstream 3710 38154760 ~ 38155121 (-) True G89588
TU111782 lncRNA upstream 198173 38349223 ~ 38349555 (-) True G89609
TU111785 lncRNA upstream 260997 38412047 ~ 38414262 (-) True G89612
TU111790 lncRNA upstream 270683 38421733 ~ 38422676 (-) True G89617
AMCG00021907 mRNA downstream 176727 37957755 ~ 37958533 (-) True AMCG00021907
AMCG00021906 mRNA downstream 900419 37212616 ~ 37234841 (-) True AMCG00021906
AMCG00021905 mRNA downstream 963881 37091198 ~ 37171379 (-) True AMCG00021905
AMCG00021904 mRNA downstream 1135620 36992851 ~ 36999640 (-) True AMCG00021904
AMCG00021903 mRNA downstream 1160144 36944033 ~ 36975116 (-) True AMCG00021903
AMCG00021909 mRNA upstream 29030 38180080 ~ 38224604 (-) True AMCG00021909
AMCG00021908 mRNA upstream 87088 38238138 ~ 38245037 (-) True AMCG00021908
AMCG00021913 mRNA upstream 668361 38819411 ~ 38826295 (-) True AMCG00021913
AMCG00021921 mRNA upstream 787557 38938607 ~ 38945501 (-) True AMCG00021921
AMCG00021920 mRNA upstream 893735 39044785 ~ 39052673 (-) True AMCG00021920
TU111619 other downstream 1447618 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 1696910 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 2188276 35943752 ~ 35946984 (-) True G89368
TU111315 other downstream 2739489 35375016 ~ 35395771 (-) True G89217
TU111040 other downstream 3784135 34346988 ~ 34351125 (-) True G89004
TU111771 other upstream 110337 38261387 ~ 38283855 (-) True G89598
TU111784 other upstream 244521 38395571 ~ 38397755 (-) True G89611
TU111863 other upstream 1104829 39255879 ~ 39259804 (-) False AMCG00021918
TU111960 other upstream 1334783 39485833 ~ 39486288 (-) True G89765

Expression Profile