RNA id: TU111781


Basic Information

Item Value
RNA id TU111781
length 208
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G89608
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38418921 ~ 38419128 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGAAATCAATCTTCAGAGAAGCAGCAATTGCTGCCGAGATGCACTCTTTTCACAGATCTAACATACTGCCGTCAAAATAGCATACACTTATAGCAGGAGACAGTGAGATAAGTAAGTTCTTTATTGGAAGTGTGAATGATGCATGCGTAAGCCAGTTTGATGCAAAGTGACAGAGGCCAAATGGTAAGTAATGCAAGAAGTGGGCCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111780 lncRNA upstream 35966 38382692 ~ 38382955 (+) True G89607
TU111770 lncRNA upstream 168681 38248914 ~ 38250240 (+) True G89597
TU111749 lncRNA upstream 257287 38158553 ~ 38161634 (+) True G89579
TU111753 lncRNA upstream 263789 38154835 ~ 38155132 (+) True G89583
TU111740 lncRNA upstream 359387 38017304 ~ 38059534 (+) True G89571
TU111779 lncRNA downstream 5282 38424410 ~ 38425293 (+) True G89606
TU111792 lncRNA downstream 9295 38428423 ~ 38429446 (+) True G89619
TU111794 lncRNA downstream 14140 38433268 ~ 38433484 (+) True G89621
TU111799 lncRNA downstream 106297 38525425 ~ 38525678 (+) True G89626
TU111807 lncRNA downstream 434838 38853966 ~ 38855149 (+) True G89634
AMCG00021912 mRNA upstream 21247 38395806 ~ 38397674 (+) True AMCG00021912
AMCG00021910 mRNA upstream 276762 38137122 ~ 38142159 (+) True AMCG00021910
AMCG00021911 mRNA upstream 297349 38120324 ~ 38121572 (+) True AMCG00021911
AMCG00021900 mRNA upstream 1761200 36650232 ~ 36657721 (+) False AMCG00021900
AMCG00021899 mRNA upstream 1917093 36465786 ~ 36501828 (+) True AMCG00021899
AMCG00021914 mRNA downstream 436698 38855826 ~ 38865619 (+) True AMCG00021914
AMCG00021915 mRNA downstream 939590 39358718 ~ 39369622 (+) True AMCG00021915
AMCG00021927 mRNA downstream 1041131 39460259 ~ 39461475 (+) True AMCG00021927
TU111747 other upstream 267872 38121257 ~ 38151049 (+) True G89578
TU111748 other upstream 267872 38121257 ~ 38151049 (+) False G89578
TU111415 other upstream 2451537 35964571 ~ 35967384 (+) False G89299
TU111425 other upstream 2451537 35964571 ~ 35967384 (+) True G89299
TU111226 other upstream 3155384 35211133 ~ 35263537 (+) True G89142
TU111805 other downstream 398744 38817872 ~ 38822685 (+) True G89632
TU111914 other downstream 981396 39400524 ~ 39408261 (+) True G89728

Expression Profile