RNA id: TU111784


Basic Information

Item Value
RNA id TU111784
length 2185
RNA type TUCP
GC content 0.49
exon number 1
gene id G89611
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38395571 ~ 38397755 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aatGTAAGCAaaatttaaagcaaaaacaaacacaaaatgctcaCAAAACCCAGCTGAACCTAAAACCTCAGAAAGAGCAAGCTACATACCTGAAGACAGCAGCTGCAGTACATCTTCTGAGATATCCCCTGCTCCGTCTTCTCCTACGACTGAAGCAGGTGAATCCTCAGCGATGGAGGCTGAGCCTGGGGTGCTGGGCTGGCTGACTGAGCCTGACTCCCCCTCACTGACTGAGCCGCATCTCTCTCCCCGTGATGCCCTGCCGCTGTCGCTGCTGCTTCTGGTCTCCTTGCGATGCACCCGCGAGTGCAGCACCATCTGGTGGTAAGTGCGAAACACCTTTCCACACTCAAAGCACTCTGTGTTCTTGTTCTGGGAGGACCTCCGGCTCTGGCGGGACGAGGGCCGGTAGTCTGAGTCACTGAGGCTCTCCGGGCTGAGGTCTCCTGGAGAGGCATTCCTATACCTCTCTACTCGATGATGTTGATGGTTGCTGctcccactgctgctgctgctactgctgctgctgctactattGTGGTTGGGACCATTACGCCTTTTCCCATTGCTGGAGCAGTGGGAGTCTGGCTCCCTCTTTCGCTTCTCCTGGCCCACAAGGACATactcccctttctctctgtcgTATGCCACATCTGCATCTGCAAGGGCTTCATCCCACCCAAAGTACTTGATGTTTTCCGAGACCTCTGCCACTTTGCCTTTGGTGGCCAGCTGCCAAGCTTGATAGCTACACACTGGATCAAGCTCCGGGATTCGTTTTCCGAACTGACTGTCTGAGGGTACCTCTATCACCGCAGCTGCTCTGAGATTCAAGAATTCCAtgaataaacttttttttgctGCAGGCTCTGTGctatcattgtttttattttcttgctggaCAGGATCACTGGTGTGAAGATGGACTTTGTTATGTATTCTCAGGCTTTCCCGGTCTTGAAATACATTCCCACACTTTGAGCAGAGCTCATAAAGGCATAGCCCACTCATCATCGCCATTTCATCCTGCACAATATCATTAATGGTGGTAACAGGCTCCGAGTCACTCTTTAGCTTGTGCTTGCTGCCTGTTTTGGGTCCATGGGATTTCATGTGATTCTTGAGGAACCAGGACTCTTTGAAGCGCCGGCCACAGATGTGACAGCCGTGGTCAAAGGTGCCAATATGCTTCTTCATATGGGCTTTCAGAAACCATGCTTGGCTGAAAACCTGGCTACACACCTCGCAAGGGAAGTCCCCTTCCACAGTACCCGACTCTCCTTTCACAGGTTCATTTTCAACTAGCTCTCTGACAGGTGCTTCTACAGTGATGTGCAGCTTTTCGATGTGGCTCAAGAGTTGGTCCTCCCTCAGAGCCACAAAGCTGCACAGCCTACACCGATAGGGCTTGTGAAAGACCTGGATGTGCTGTTCAAGTTCGTCCTTGTTGCTGAGCTTCTTCTTGCAGAACGAGCACTGGAAGGAGGAGGAAGCCTTGCCTGTTTCACTGGTGGTGCCCACAATCTTCTCTTTCTTGATACTCCTCAACAAGATTTTGCCATTTTCATCCTTGGCAGTGCCATTTACGATGTTGTTACAAGCTGATGTGCTTTCTGTTGGACTCGTACATCCATCCAGCCCTTCAGAAACGCCCATCTCTCCCAGTTGACCCTCTCCCAGTTCCTCCCCATCATGACCGAGACTCAGGGTTCCCATCTTGTGAGTACGTATGTGAATTTTAAGATTCCCCTTCTGAGATGCTCTGTGGTCGCAGTAAGGGCATTTGTAGGGCTTCTCGCCTGTGTGCTTCCTCATATGCTGTGACAGAGAGCTCTGGAAAGGAAAGCTTTTGCCACAGATGTTGCAAGCATGGTAGAGAGACTTGTCTTCATCAGTGTCATTCCTGTTCATCTTGTTTCCATCTGTGGAGGATTCCTGGCACTCCATCATTTCAGAATTTCCACTGTGATCCATGACTACTGAACCGTTGGCTATCTATAATGATATAACCAGTCCAATGGAAGCCgaaggttttttgttttagtcatacattgtttaaagacattttcttcaaaaatgtcattattgatcctttctttcttctttctatatatttgttttcttcttcagcGCATCTATACTCAGGATGAATCACCACTGGCACATATCCTTAATTCTTAGATct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111782 lncRNA downstream 46016 38349223 ~ 38349555 (-) True G89609
TU111759 lncRNA downstream 240450 38154760 ~ 38155121 (-) True G89588
TU111758 lncRNA downstream 242058 38153228 ~ 38153513 (-) True G89587
TU111754 lncRNA downstream 244521 38135260 ~ 38151050 (-) True G89584
TU111738 lncRNA downstream 415157 37980089 ~ 37980414 (-) True G89570
TU111785 lncRNA upstream 14292 38412047 ~ 38414262 (-) True G89612
TU111790 lncRNA upstream 23978 38421733 ~ 38422676 (-) True G89617
TU111791 lncRNA upstream 24945 38422700 ~ 38425440 (-) True G89618
TU111798 lncRNA upstream 93580 38491335 ~ 38491585 (-) True G89625
TU111803 lncRNA upstream 246073 38643828 ~ 38644038 (-) True G89630
AMCG00021908 mRNA downstream 150534 38238138 ~ 38245037 (-) True AMCG00021908
AMCG00021909 mRNA downstream 170967 38180080 ~ 38224604 (-) True AMCG00021909
AMCG00021907 mRNA downstream 437038 37957755 ~ 37958533 (-) True AMCG00021907
AMCG00021906 mRNA downstream 1160730 37212616 ~ 37234841 (-) True AMCG00021906
AMCG00021905 mRNA downstream 1224192 37091198 ~ 37171379 (-) True AMCG00021905
AMCG00021913 mRNA upstream 421656 38819411 ~ 38826295 (-) True AMCG00021913
AMCG00021921 mRNA upstream 540852 38938607 ~ 38945501 (-) True AMCG00021921
AMCG00021920 mRNA upstream 647030 39044785 ~ 39052673 (-) True AMCG00021920
AMCG00021919 mRNA upstream 793143 39190898 ~ 39192682 (-) True AMCG00021919
AMCG00021917 mRNA upstream 811260 39209015 ~ 39234436 (-) True AMCG00021917
TU111771 other downstream 111716 38261387 ~ 38283855 (-) True G89598
TU111619 other downstream 1707929 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 1957221 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 2448587 35943752 ~ 35946984 (-) True G89368
TU111315 other downstream 2999800 35375016 ~ 35395771 (-) True G89217
TU111863 other upstream 858124 39255879 ~ 39259804 (-) False AMCG00021918
TU111960 other upstream 1088078 39485833 ~ 39486288 (-) True G89765

Expression Profile