RNA id: TU111785


Basic Information

Item Value
RNA id TU111785
length 2216
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G89612
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38412047 ~ 38414262 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCCTGAGTAATCCCACAGattggattaaattaatgtgatgcatttgcatatttatcaaCAGCTCAAACTCTGTCAGGGGCCAAAAATCATAATGACAGGGAAACAGAATAAcactaaaatatattgcaaatcTGCCAGTCACCTGTTAGCCTTCTTGTCTAAATTGCTTTCATCATCTGTTCACACACAGCCTGTACAGCCAGTAACTCAACATATAGTTATTTTCATAGCTCTGTTGTCTgttattcaaaaataatttgggtttttcattgtaaaatggAATATTGGTAGTGTTCACAATTACATCTAAATTATAAATGTGCAAGTGTACAtacttttcaatgcattttaacaataatacattttcattatgccTCAGGTTCGGTTTATTTCAATCAGACATCCACAGTTCCTGCAggttttaaacaataaacatgCGTTAGGATTAGGGTGAGATTAAGGCTTTATGGTAGGATAGGGGCTATAGTTAAGGTTATGGTTAGTGTTGAGATTTTGTGTAGAGATGTATGGAGCCCCAGGTACACCTGGATGGTTTTTAAGAAATTTAGAAATTGTGTGATAAAATAACTGTTCAACCTTACCTGTCTGATCCAGCATGGGATTGTTGGAACCCCAGCGATGGTAGAGGGTGGCCAGGTCATGAGTGTTACAGTTCTTTAAGAAACCAAGGATGTCCACCGGTGTCTCTGGTCCATCAGAGAGCTGTTCCTGTTTGATGTGTATCTGTAGGGAGGGGGAGCCCGGTActatattgctatatatttgGGAGCCACTAAGACTACGACTGCCAGTGTTGTAGCTTTCCACAGTGTGGTGATCACTGCCCAGCTCTCGCTGAGTCATTACAGCTGGGGGCATCTCTTGCCTGCTTGGCTGCTCGCTTTTCACTGAGGATTGATATGAAGGAGGATGCAAAGCTGAAGCTTTGACCTTGGTATGCTCAAAGAGGCCATGCTTGTTGGAAAGCATAAACCCCAGCCCTTCCTGTGAAAACAGGTACTTCTCCATTGACCTGCCACCAGTTTTTGCATTCCCCAATGTCCTCTGAGGAGCCCCTACATTTTTCTCGAAGGCTCCCGCCGGTGCAACTTTTGGATAAATCTCCACCTTGGGCCTGGTGTGTGGTGGCTCGTCCTGCTTGCTGTAGTTTCCCTTGGGAttagtctgtttgttttttttaatattgtacagGCTTGAGACATTGGGGACTGCCTTATCAATTGTATAAGAGTCCCTGCCTTGGGAAGTACTGGGCTGACTTGAACAGGCAGCTGTGGCCTTTTCCTTTGGTGACTGAGAGTCGCTTTGCACTGGTGGCAAAGTGCGGGTGACTCTAGAAACTGGAATAGGCTGGCATTCCTTACCATCTAatgctggaggaggcccagtGCGTCTCCTGTGGCTCAAGGAGGCCGAAGTCTCTTTGGGGCCTTTAAAGCCATTTCTCTGTACCCACTTGGGAGCCATGTCATTGCAGCTTATCTTGTGTGAAATTCTTTGGTGCATCCATAGAACCTCAGGGTAACAGGTTGTGTGAGAACAGTATGAGCACTGGTGTTGGATCAAAGCGTTCTCCAGGGATGAGGTAGGAAGATCCTTCATGGCATTGTCACTGCCTGACCGAAGTCTAGAGTGCATGGATAGATTTAAAGGGGATGTGTAACTCTCATACTGTAGTCCAGTTTCTTTCTCACTTGCCAATAGTTTGACTTCATCAGCCTGAGACCTCTCTAAAAGTTGTGGGTCAGCACTGCTTCTGGACACAACCTGATCTGGGTTAGGATCAGTCACCATCTCTTCGAGGCATTTGTAGGTGTCCGAGAGCTTACAGGGTGGctgcagaattgtttttttcagtttgggATAACTGCCATAATTTCCATTCTTTCCCAAGTTTCCATTACTGTTGTTCTGTGGTAAAGACCCACTCACTGAATCCCTGCTGTCCATGTGTTGATCCTCCGTGTGGGACACCAGTAAGGAGGaatctgttgttttaaaatcacagtGGCTGCATGTATATGGCTTTCCATCTATAAGAGACATAAAGAATATGtaagcacatatatatataaaaccaaattgttacttaatatatttaaaaatatttctcaaaacaaaaacatttgaagagagCCCAAGGACATTCTAGTtcttttattcatattattcacatatttctgttttgggGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111782 lncRNA downstream 62492 38349223 ~ 38349555 (-) True G89609
TU111759 lncRNA downstream 256926 38154760 ~ 38155121 (-) True G89588
TU111758 lncRNA downstream 258534 38153228 ~ 38153513 (-) True G89587
TU111754 lncRNA downstream 260997 38135260 ~ 38151050 (-) True G89584
TU111738 lncRNA downstream 431633 37980089 ~ 37980414 (-) True G89570
TU111790 lncRNA upstream 7471 38421733 ~ 38422676 (-) True G89617
TU111791 lncRNA upstream 8438 38422700 ~ 38425440 (-) True G89618
TU111798 lncRNA upstream 77073 38491335 ~ 38491585 (-) True G89625
TU111803 lncRNA upstream 229566 38643828 ~ 38644038 (-) True G89630
TU111804 lncRNA upstream 402682 38816944 ~ 38817150 (-) True G89631
AMCG00021908 mRNA downstream 167010 38238138 ~ 38245037 (-) True AMCG00021908
AMCG00021909 mRNA downstream 187443 38180080 ~ 38224604 (-) True AMCG00021909
AMCG00021907 mRNA downstream 453514 37957755 ~ 37958533 (-) True AMCG00021907
AMCG00021906 mRNA downstream 1177206 37212616 ~ 37234841 (-) True AMCG00021906
AMCG00021905 mRNA downstream 1240668 37091198 ~ 37171379 (-) True AMCG00021905
AMCG00021913 mRNA upstream 405149 38819411 ~ 38826295 (-) True AMCG00021913
AMCG00021921 mRNA upstream 524345 38938607 ~ 38945501 (-) True AMCG00021921
AMCG00021920 mRNA upstream 630523 39044785 ~ 39052673 (-) True AMCG00021920
AMCG00021919 mRNA upstream 776636 39190898 ~ 39192682 (-) True AMCG00021919
AMCG00021917 mRNA upstream 794753 39209015 ~ 39234436 (-) True AMCG00021917
TU111784 other downstream 14292 38395571 ~ 38397755 (-) True G89611
TU111771 other downstream 128192 38261387 ~ 38283855 (-) True G89598
TU111619 other downstream 1724405 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 1973697 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 2465063 35943752 ~ 35946984 (-) True G89368
TU111863 other upstream 841617 39255879 ~ 39259804 (-) False AMCG00021918
TU111960 other upstream 1071571 39485833 ~ 39486288 (-) True G89765

Expression Profile