RNA id: TU111791


Basic Information

Item Value
RNA id TU111791
length 2741
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G89618
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38422700 ~ 38425440 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acatacacataaattGAGGGAATATTTAACAAAACTGGTAACGTAACAGCCAAGGAACGAGGCTGTAACTTTTGCCAcatgaaaacatgcaaaaaatttaaaatgaaaggctttGCAAAAACACTTGCTCAGTACGTAGGCAGTGGATTATTGAACACTTTAATGtggaaattacattacaatttgaacaatgtataaaacaacTGTTAAGAAgtgagaaatgttttgtttgaagaGGTAGAGAATTTCTCATTGGTAACAAGTCAGTGGATGGTTTCTAAGAATgttatgcaattaaaaaaactaaaaacattaaaacatttgattttgaaagttTGTCAAtaatgactgaaaataaatactacaaccaatcaaatacacattaaatactATTATCTATTTCAACAACTAAAATaacaatcaaatcaatacaatacTGCTCATAAGGGAACACACTAAACTCAAAAGTCTGAGAATAGACAGTTTCTTTGGGATGGCACCCTTTTCAGTTGccaaagacaaataaagaaagaatgtaaaaaaatgatcTGGGGCTGAATGGTTTTGTATGATTCCCACTTTTAGAAAGAGCTTCTGGAATCAAgtacacagagaaaacaaagataaatatttgcaatatCGTGTGTTATACTGTGCACCCATGTACATAATTCATAAGACAATGTAACAATTTTGTCTCACATGCCATAATGATcttttatagtattttatttaaacgaTTTCTTAATCACTTCTAAAATAGTCATGTTTTGGATGGAATTCAACACACACGTTGTACATTTCCCAACTTCGTGAGAGACATTAAGTACATACATTCGGTACAGTCACTTCTTAAGAGTATTCTCTAAGCTGCCTTTTAGTAAGATACATCCATAATAAACTGAGCAGGGAAAATCTACCAAATATTTGTATCCATAATATAACAGCATTCCAGAAATGGCTCTCCaatgaacaaaagaaagaaacaaacaaacaaacaaacaaaaaactattataTTTTCAAGTCAAATGTCCATCTCAGAAACAATATttgaagtaaatatatatatatatatatatatatatatatatatcttgttaGTGATACGTGCAAACTGGAATGTGGCTAAGCATTTACACGTTTAATTCCATACCACATGGGAAAACTAGTGACACCCccaaagttaaataaataataaagcaagaaATATATATCTATGTGCACCATTGTTTACCAACAACTTAATTTTGGTATTCGATGCTGTAAAGGGTTTTAGAAatttacaggagaataaaatCCTCCAGACATGTTTCTACTCAATCATCACATATCAAGTAAATAGTGAAGAGCAACTAGTGGAAACCTAAAGGTAATAAGATAttgtacaataatattaataaaacgaTAAAATTATATCATACTACTTATTAGGCAATATAAGTTTGCTACAAGCCAACCATTATTTATGtgtctctgtatttatatatatatatatatatatatatagtatgtgcACATGTGTAATCACTTGATACAGAAGTTTTAGATCTTTGTACATGTAAAAACTACCAgtgtctgaaaatatatatttatatatttgcatgcttggattttctttttttctgttttataaaatattatagaGTTACAAAAATCTAGCAATgctattacaaaaaaatctggtacatactctctctttcactctcagTCAAGGCAGCAGTAACTTTCTGTGATGCaataatttatgtttgtatgtgcaAATGCTGAAACCAGATAGTAGTTGACAACAACAGGTACAGGAACAGAGTAGAATAAGAAAACCCCAAAAGTAGCCTTATAATTGCATATACCAAATGGCTTTTTGTCCTAATGTGCCAGAGTCttgctaaattgaaataaaagctATTATTGCAAAGGAGGTATATGAAGCTTCTTGAAATAATCCAGTGGATTTTTAAGAATTAGGAATAAGAGTATAAAACCCAACAGTTAGGGATTGTAGAACCATAGTCACAAATTCCACATGTGATTTCATTTTCGGAGCTATTGTCAACAGAGTGCAAAGTTTCTGTCCATGTGTTCATCAGAATGCTGTTGGAACTTGCTCCCGGCACATTTTATTGCCACAATGCCATGTTGAGTTCTTACTGTGATAATAAAACCCTTCgatttttacattgtattcgttttttttcttcatgtattaTAGTAGTACCACCACACACTTTTTGTAAATACAGACAATGCAATCTAGCCCTGTGCAAGGCAAATCCTGAGGAAAAAATAGAAACCTTTCCTGTTAGTGTTCCACAGAcctttataaaacacttcaagatTGATTCTAGTTTTCTGCTAGTTCTGACGCAGCATTTAAGGATAAAAAATCCTCTGTAGCACAgcaaggtttgtttgttttttcagaaaaacaGTCCAGCTCGAAAGACAGCTGTAGTTCTTTATGCATTTGCCAGTGTCAAGGTTTTCAAGTTTAGTTCAATCCAAAACCAGTGGTGGCAAATGCCTCACAGCTGTCCATGTAAACCTGTGCCTTTCAAGGCTCTCAGTTAATGGttgcatttcattataattctgcagtgtgtgtggtgttCATCCATAAGTGAGGCAAACACAAGAGCTTTGCAATTAGTAAAACTTATAAATGgcagaaatcattaaaaaccaGTGCACCATTTCACAGTGTCGTCATTTGtcatcatatatacatacatctatatatatc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111790 lncRNA downstream 24 38421733 ~ 38422676 (-) True G89617
TU111785 lncRNA downstream 8438 38412047 ~ 38414262 (-) True G89612
TU111782 lncRNA downstream 73145 38349223 ~ 38349555 (-) True G89609
TU111759 lncRNA downstream 267579 38154760 ~ 38155121 (-) True G89588
TU111758 lncRNA downstream 269187 38153228 ~ 38153513 (-) True G89587
TU111798 lncRNA upstream 65895 38491335 ~ 38491585 (-) True G89625
TU111803 lncRNA upstream 218388 38643828 ~ 38644038 (-) True G89630
TU111804 lncRNA upstream 391504 38816944 ~ 38817150 (-) True G89631
TU111830 lncRNA upstream 514122 38939562 ~ 38939824 (-) True G89657
TU111901 lncRNA upstream 908485 39333925 ~ 39334125 (-) True G89716
AMCG00021908 mRNA downstream 177663 38238138 ~ 38245037 (-) True AMCG00021908
AMCG00021909 mRNA downstream 198096 38180080 ~ 38224604 (-) True AMCG00021909
AMCG00021907 mRNA downstream 464167 37957755 ~ 37958533 (-) True AMCG00021907
AMCG00021906 mRNA downstream 1187859 37212616 ~ 37234841 (-) True AMCG00021906
AMCG00021905 mRNA downstream 1251321 37091198 ~ 37171379 (-) True AMCG00021905
AMCG00021913 mRNA upstream 393971 38819411 ~ 38826295 (-) True AMCG00021913
AMCG00021921 mRNA upstream 513167 38938607 ~ 38945501 (-) True AMCG00021921
AMCG00021920 mRNA upstream 619345 39044785 ~ 39052673 (-) True AMCG00021920
AMCG00021919 mRNA upstream 765458 39190898 ~ 39192682 (-) True AMCG00021919
AMCG00021917 mRNA upstream 783575 39209015 ~ 39234436 (-) True AMCG00021917
TU111784 other downstream 24945 38395571 ~ 38397755 (-) True G89611
TU111771 other downstream 138845 38261387 ~ 38283855 (-) True G89598
TU111619 other downstream 1735058 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 1984350 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 2475716 35943752 ~ 35946984 (-) True G89368
TU111863 other upstream 830439 39255879 ~ 39259804 (-) False AMCG00021918
TU111960 other upstream 1060393 39485833 ~ 39486288 (-) True G89765

Expression Profile