RNA id: TU111794


Basic Information

Item Value
RNA id TU111794
length 217
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G89621
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38433268 ~ 38433484 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ggtactgaccactgcagcccaggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatttggcccttgtcaaagtcgctcagatccttacgcttgcccatttttcctgcttctaacacattaactttgaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgag

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0061061 muscle structure development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111792 lncRNA upstream 3822 38428423 ~ 38429446 (+) True G89619
TU111779 lncRNA upstream 7975 38424410 ~ 38425293 (+) True G89606
TU111781 lncRNA upstream 14140 38418921 ~ 38419128 (+) True G89608
TU111780 lncRNA upstream 50313 38382692 ~ 38382955 (+) True G89607
TU111770 lncRNA upstream 183028 38248914 ~ 38250240 (+) True G89597
TU111799 lncRNA downstream 91941 38525425 ~ 38525678 (+) True G89626
TU111807 lncRNA downstream 420482 38853966 ~ 38855149 (+) True G89634
TU111810 lncRNA downstream 434179 38867663 ~ 38868357 (+) True G89637
TU111845 lncRNA downstream 768793 39202277 ~ 39206399 (+) True G89672
TU111860 lncRNA downstream 796347 39229831 ~ 39230146 (+) True G89686
AMCG00021912 mRNA upstream 35594 38395806 ~ 38397674 (+) True AMCG00021912
AMCG00021910 mRNA upstream 291109 38137122 ~ 38142159 (+) True AMCG00021910
AMCG00021911 mRNA upstream 311696 38120324 ~ 38121572 (+) True AMCG00021911
AMCG00021900 mRNA upstream 1775547 36650232 ~ 36657721 (+) False AMCG00021900
AMCG00021899 mRNA upstream 1931440 36465786 ~ 36501828 (+) True AMCG00021899
AMCG00021914 mRNA downstream 422342 38855826 ~ 38865619 (+) True AMCG00021914
AMCG00021915 mRNA downstream 925234 39358718 ~ 39369622 (+) True AMCG00021915
AMCG00021927 mRNA downstream 1026775 39460259 ~ 39461475 (+) True AMCG00021927
TU111747 other upstream 282219 38121257 ~ 38151049 (+) True G89578
TU111748 other upstream 282219 38121257 ~ 38151049 (+) False G89578
TU111415 other upstream 2465884 35964571 ~ 35967384 (+) False G89299
TU111425 other upstream 2465884 35964571 ~ 35967384 (+) True G89299
TU111226 other upstream 3169731 35211133 ~ 35263537 (+) True G89142
TU111805 other downstream 384388 38817872 ~ 38822685 (+) True G89632
TU111914 other downstream 967040 39400524 ~ 39408261 (+) True G89728

Expression Profile