RNA id: TU111805


Basic Information

Item Value
RNA id TU111805
length 4814
RNA type TUCP
GC content 0.43
exon number 1
gene id G89632
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38817872 ~ 38822685 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCAATGCATATAAATAAGAGGAGCCCAGTAAGTAATACATCTGAGAAGTGGTGCATTTTGttgtttagattattttttttcaaatctttatCATACGGTAGTGGAAACCAGAGGAGAGACCGAGCTATGTGGCTCTGGGGGTCAATAACTGTGCCCCGTTTTCAACCATCACGGTTATTACAATGGTGAATTAtcagttttgtaaataaaaatgaagaaaaacaatgaaggtTTACCAAGAACTGCTTTagggtttattttacaattgagaaaaaaaaagaaaaaacatcaggTTTATTTGTGCGAGccaaaaagattttttttttttttttacattattcatgataaaacattgaaatgtataattcattgTGCATTGCTTACTTATTTCACATAATAACATGCATCCAATTAGATGCacgtatatttaaaattatttttgtaaaccaaGCTGGAGGaactaaattgtatttgtttagtttttaaagaaaactcaTGGctctacagtatatatacaggatttgttgttgttttttaatttatatataaaatgacattataAAAGTTAAAGAATGCACACAGTCATAAAGTACAAACATAGGTGAACTGTTGCAAATGGCAAGATATGTCATATGTAATTTTATACATTGTTGCTGAACATTTACatgtaacatgttttttatgtatctgTATGGGTTGAAATTTAAGTGGCACAATATAGAAAGTTAGACTTACCAAAgcttatatttgtaaattactATAAATTGATACTTTACAAGGAAAAGAAATTCcatctttaacattttaaaaactaactTGCATACTAGTACTTGATTTTTTTGCCAAAAGCTGTAATCTGCTGTTTCCCccagcttttatttattcttattttgatgttttacaCTTACAAAGGTGACTTGCAGATCCCTTCAGAACTGAAGACTATTTTAACATTGCAATTTGCCAATAAATCCTTTGAAAAATTCAAAGTCAAAATTATATGTTGATCATTATAATCAATCTGGTTTTGTGTGATGCagagaacataaaaaataccggtattcttaataaaataaacttttacacttgattttattttattttaaggtgcAGAAATGCTACTTCAGTCTCCAAAAGGGCTCACCTATTCTTTTTGTGTTCATATAATCTGAGCATCTTCATATCAATTTTGAATTTACATAGCTATCATTATATGGCCACCATCGTGGTCTGAAGAGAAACagtaggtttatttttattttagttttttgttagttttttttgtagagcaaaaacagaatgaaaacaagTGTTAATCCTTGATTCACAAAAAGACATGCACAGATCAGACAAAGagcatataaatacattacaaaataagtgttaggaaaaaaaaaaaaaaaaacatggtccAGTTAGGCAGTTTTACAACGTAAGTAAGACTGATTTCGAAGGCTCAGTTCAGGCCTAGTGCAGTACTGTGATTAAATTTAGTGCAATGATTCTCTGGTCAGTTACACAGCTGCTCACCTGGACTCTACTGTTTCTCTAGCTTTTCTAGTTCAGTGACATACACCAAATGGTCCTCTGGTGACTTGCCATGTGTTTTGCTAAGGTGCAGTTTTACTGCATGTTTGCTGGCGAAAGTTCGGTTGCACAGCTTACACTGGAATATGGATCCAGAGTCATCCTCGGAGAGCCCGAGTGAGCCAAATGTCTTATCGGATATCACCTTTGAAACAGCCTGCTGCTCCCGTATGTGATCTATTGACAACTTTGACAGGTCCTTCAAGCTGAAGCCTAAATGCGACTCTAAGTGGTTTATGTAAGTGGAGGGAGTCCTGAACTGAGAGGCACAGTCATTGCAAAGGAACACTGGTTGACCAGAATCTATATTCTTTAGGAACTTCGTTCCACCTGTCCGCCTCAACTGATACTTAACGTTGGCCAGCCAATGGCTTATGGTGGTCATGGAAAGACCAGTGAATTTGCAAATGTGGACCCGCTCTTGTGGGCCCAGGTCAGTCATAATGTACTTCCCCTCTGGGGTTTCCCTCAGACTGGAGGCGAACTGTGCCTGGAGAATTAGGAGATGCTGGGGATTCCAGTTAGACTGCCGGCCCTTCCGTTTCTGAACTGGAGACAACTCCTCTAAGGCGTCCTCGAACGCGCTTCCGTCGGCATCTGACTTCTCAGAAATGGATGATGGTGTCGAAGACTTGGGTGTCAAGCGTCCAGTGAGGTTTTTGACCATGTCAGAAATGTCCATCAGTGCGTTCTCCCGCAATGGAGATGAAATGGATTCCGACAAACTAGAAAGGATGGgtctgctgctgctactgctgttactgctgttgttgttgttattgttgctattgttgctgttggtggtggtgtttgtaTTCCCATTGCTGTTTTTGGATTTTGTCAAGTCTATAGGCTGGTCATTGCTTTCATAGTAATACCTGTTGATGGACTCTGTTTGCTTGACCTGAGTTGGGGGATAGATGGGCTTTTCTAACATGCTGTTGCTAATTTTGTACAGCATAGCCAAGGGGTCCAAGACTGGACTAACTGGCTTGGATGCTTTGCCTAGATGAGTGTTCATAATGGATTGCAATGCACTAAGGGGGTTAACAAAAGGCTGTTCTGGTGAATGGTCTGTAATGATTCCCAATGTGTTGCAACCATTTCTGACTGGTGATTTCAGGGCCTCTGTACCATTTTTGATGTGATTATCTGCTGAACTCTCTTTTTGCATCTTTGCAGGCTCTGCCTCCACAATATTGTTCTTCATCACTGGCTTGCTGCTCAGGTCGTCTGGCTTAGGCGAGTCTTTATTCTCTACTGCAGGGGGAGAAGGGGCTTTGATCAAGACAGGCTTCCCTTTTTCCAAAAGTTTCTCCTCTTTCTTTGCTGATATTTTCCCCGTAACCTTTTCAACCAGCTCCTCCATGGCAGAGACATTGCTTTTGTGGATGGGAGGTGATGTGCTCCCAGGGGAGTGGATCAATGCAGATGCCTGGTCACATGACATCGCTTTCATGTTGTTGTTATAAGAAGGCTGCACTTGAACACTCTGCACATTGGACAGTGCAGATTTTGCAGACCCCTGGAGCTGGTAAGCGGCATGAATGCTGGGGTAACCCCCCCAGGTAGGGGTGCCATTTTGGGCCTTGCTGATTGCACTGGACACTGTGTTTTCCAAGGATTTCAGAATATCTATCCCTCCTTTTGGAGTCTCTTCTAAATCCTCCTCTCTGAGATATTTATACGGCATGTTAGTCTCGGTCTTCTCTCCTGgctcttccttctcctccttgATTTTCTTCTGTGGTTCAATGACTTCCATCTTCTCCTCTTCTAGCTCTCTCTTCTCCTCAGAACCAGATGAATGGGCAGGGGAATCTGGCTGTGACTTGATATTCGGCACGGGCAGCCTCGTAGTTGTGGGAGGCAGAGGGATAGACTGAATCTTTTCCTCCACCACTGGGTCAAAGACCAGTTGCTTTCCCTTTTTCGAAGCAGAGTTGGTCACTTTAAGAAAATGTCCTGTGACCATCATGTGAGCTGTCAACTGCTGAAGGGTGTCATGTGAACTCCCACACTCCATGCATTTCAGAATTTGGGCCTTGCGGGCCTCAAACTGCCAAGTGTAGCTGGCACCATTTTGATAGCCATAGCGATTGTTTGGCGTCACATAAGGATTAGCTGTTTTCTGGTCTTTTGTAGGCTCACCCATTGGAACACCTGGCGTGCTGCTTATAGACTCTGGGGAGCAGGGGGAAACCAAGTCCTGAAGTGCTCGTTTTTTGGTAGAGGGGACCAGCTTAGAGGTGAGGGCTGGCACTGGTTCTTTAAGAGGCACTTTCTGgtaatgctttgttttgatcATGTGGACACTCAGGTCTTGCAAGGACTCAAAGGAATGCCCACAGTACATACACTTAAGCACTTTCTGTGCATCCTCCTTTCCTTCCATCTCCATCAAGGAGCGTTTCCTGGGCTTTGACCATTTCTTTCCGCTGTCCTCCTCTTTGTCTTTGTTGTCGTCACGATAGTGTCCCGTCTCATTCATGTGTACAGTGAGACCCACAAGTGTATCATACGCTGCACTGCAGTCCTTACACCGGAACTTGCTTGCACCGGTAAACACAGAGCCGTACAGTTTACTGTTCTGCCTGTAAAGCTGCACTGTACTGAACAGGCTGGGCTCAGGAAGGAGACTGTAAGGGGTCTGCTGCAATGTTTTAGCCAGCGCAGCTTGGTGCCAGTCATAGGCTATTCCTCCACCATTACtagtgctgttgttgttgttgttggtggtggtggtggtggtggtggtgttgttgttgttgttgttgttgctgctgcttccGTTATGGCTGCTTCCACTGCTACTGGTGCTGGCGCTCACCTGCTTGGTTTTCATTATATCCATGGCAATGCTAGACCAAGAAGACTCTGAGATCAAGTTTGCATAAACGGCTTTCATCTGCGCCAGGCTATCCTGAATGGACAGGCCATTGTCCGTACCAGTGGCCTCTTCTTTCTCATGGCCATCTTTCGAGGAAGTGCTCTTGAAGTCTGCCAGCCTATCACTGGTGTCACTGAGGGGAGATGCATACCCCGCATCCTGATTAGTCGCAGTGCTAAGGGGGGAGTTCTGATAGCTGGGGGCATCTTtgctttcctcctcctcctcattgcAGGGGAACTCATTGTCCTGGGCATCTAGAGAGAGTCCATCATCCTGTAGGTTTTCTTCATCTATTTCTGCAGCCTTGAGCTCCTCCTCCGGCACATAAGctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111799 lncRNA upstream 292194 38525425 ~ 38525678 (+) True G89626
TU111794 lncRNA upstream 384388 38433268 ~ 38433484 (+) True G89621
TU111792 lncRNA upstream 388426 38428423 ~ 38429446 (+) True G89619
TU111779 lncRNA upstream 392579 38424410 ~ 38425293 (+) True G89606
TU111781 lncRNA upstream 398744 38418921 ~ 38419128 (+) True G89608
TU111807 lncRNA downstream 31281 38853966 ~ 38855149 (+) True G89634
TU111810 lncRNA downstream 44978 38867663 ~ 38868357 (+) True G89637
TU111845 lncRNA downstream 379592 39202277 ~ 39206399 (+) True G89672
TU111860 lncRNA downstream 407146 39229831 ~ 39230146 (+) True G89686
TU111862 lncRNA downstream 433193 39255878 ~ 39258480 (+) True G89688
AMCG00021912 mRNA upstream 420198 38395806 ~ 38397674 (+) True AMCG00021912
AMCG00021910 mRNA upstream 675713 38137122 ~ 38142159 (+) True AMCG00021910
AMCG00021911 mRNA upstream 696300 38120324 ~ 38121572 (+) True AMCG00021911
AMCG00021900 mRNA upstream 2160151 36650232 ~ 36657721 (+) False AMCG00021900
AMCG00021899 mRNA upstream 2316044 36465786 ~ 36501828 (+) True AMCG00021899
AMCG00021914 mRNA downstream 33141 38855826 ~ 38865619 (+) True AMCG00021914
AMCG00021915 mRNA downstream 536033 39358718 ~ 39369622 (+) True AMCG00021915
AMCG00021927 mRNA downstream 637574 39460259 ~ 39461475 (+) True AMCG00021927
TU111747 other upstream 666823 38121257 ~ 38151049 (+) True G89578
TU111748 other upstream 666823 38121257 ~ 38151049 (+) False G89578
TU111415 other upstream 2850488 35964571 ~ 35967384 (+) False G89299
TU111425 other upstream 2850488 35964571 ~ 35967384 (+) True G89299
TU111226 other upstream 3554335 35211133 ~ 35263537 (+) True G89142
TU111914 other downstream 577839 39400524 ~ 39408261 (+) True G89728

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000321_02060877_02067096.mRNA True 4068 mRNA 0.47 3 CI01000321 2060877 ~ 2067521 (+)