RNA id: TU111810


Basic Information

Item Value
RNA id TU111810
length 695
lncRNA type inter_gene
GC content 0.30
exon number 1
gene id G89637
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38867663 ~ 38868357 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aatacaattaaaatgtcattttgtaCATAGGAGTGGGCAGCTTAATGAAGCCTCAAAGAACAATACATTCACGTCAGTTCTTTGTGAGTGAGTAAGACAGTTTGATCCAAATATTGTTGAAGAATCTGTTGTTTGAAACATTTAGAGTCTGACAAGCAACTAAGCTTCCAAAAGTCAAATTACTTAAAACTCCTAtgtagtagtattttttttatatttgcattttcagtaGGTGATTACTTTTATGGGGAGAACTAAACTTAACTAATAACTAATGGAATATACACTCCTCACATATAAAAGGTtacattcttttttaaaatctttacatttaataaatagtcCTGCCTATTTCCTGGATTCACCATATTATATAAAATCACAGACCATGTGTGAATATTCTTATTTTCTAAAAACTTGTTTTCCCTTCTTATTCTTAACAGTTCAGAAATGACATGTGTATCCATTATGCTCTTCATACACATTTTGTGACATAACCTTTTGTCTCACATAATCAGTCTTCCCCATCATTAGCACATTTGTATAGCAAACAAATACTTTATCAAAAATCCTTTTTCAGTTAGCAAAGAAGAAATTaggtttcatattttcatattttgcatgCTCATTGTCTTAGTCATAATTGTTGTATTTGTGCTTTGTGGAGGATTAAAATTTCACCAGGTATACAGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111807 lncRNA upstream 12514 38853966 ~ 38855149 (+) True G89634
TU111799 lncRNA upstream 341985 38525425 ~ 38525678 (+) True G89626
TU111794 lncRNA upstream 434179 38433268 ~ 38433484 (+) True G89621
TU111792 lncRNA upstream 438217 38428423 ~ 38429446 (+) True G89619
TU111779 lncRNA upstream 442370 38424410 ~ 38425293 (+) True G89606
TU111845 lncRNA downstream 333920 39202277 ~ 39206399 (+) True G89672
TU111860 lncRNA downstream 361474 39229831 ~ 39230146 (+) True G89686
TU111862 lncRNA downstream 387521 39255878 ~ 39258480 (+) True G89688
TU111873 lncRNA downstream 400224 39268581 ~ 39269897 (+) True G89695
TU111882 lncRNA downstream 414501 39282858 ~ 39284151 (+) True G89700
AMCG00021914 mRNA upstream 2044 38855826 ~ 38865619 (+) True AMCG00021914
AMCG00021912 mRNA upstream 469989 38395806 ~ 38397674 (+) True AMCG00021912
AMCG00021910 mRNA upstream 725504 38137122 ~ 38142159 (+) True AMCG00021910
AMCG00021911 mRNA upstream 746091 38120324 ~ 38121572 (+) True AMCG00021911
AMCG00021900 mRNA upstream 2209942 36650232 ~ 36657721 (+) False AMCG00021900
AMCG00021915 mRNA downstream 490361 39358718 ~ 39369622 (+) True AMCG00021915
AMCG00021927 mRNA downstream 591902 39460259 ~ 39461475 (+) True AMCG00021927
TU111805 other upstream 44978 38817872 ~ 38822685 (+) True G89632
TU111747 other upstream 716614 38121257 ~ 38151049 (+) True G89578
TU111748 other upstream 716614 38121257 ~ 38151049 (+) False G89578
TU111415 other upstream 2900279 35964571 ~ 35967384 (+) False G89299
TU111914 other downstream 532167 39400524 ~ 39408261 (+) True G89728

Expression Profile