RNA id: TU111830



Basic Information


Item Value
RNA id TU111830
length 263
lncRNA type intronic
GC content 0.46
exon number 1
gene id G89657
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 38939562 ~ 38939824 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


atacaccgatcagccataacattatgaccactgacaggtgaagtgaataacactgataatctcgttatcatggcacctgtcagtgggtgggatatattaggcagcaagtgaacattttgtcctcaaagttgatgtgttagaagcaggaaaaatgggcaagcgtaaggatctgagcgactttgacaagggccaaattgtgatggctagacgactgggtcagagcatctccaaaactgcagctcttgtggggtgttcccggtctg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU111804 lncRNA downstream 122412 38816944 ~ 38817150 (-) True G89631
TU111803 lncRNA downstream 295524 38643828 ~ 38644038 (-) True G89630
TU111798 lncRNA downstream 447977 38491335 ~ 38491585 (-) True G89625
TU111791 lncRNA downstream 514122 38422700 ~ 38425440 (-) True G89618
TU111790 lncRNA downstream 516886 38421733 ~ 38422676 (-) True G89617
TU111901 lncRNA upstream 394101 39333925 ~ 39334125 (-) True G89716
TU111908 lncRNA upstream 443825 39383649 ~ 39385676 (-) True G89723
TU111909 lncRNA upstream 445994 39385818 ~ 39386082 (-) True G89724
TU111943 lncRNA upstream 522651 39462475 ~ 39462921 (-) True G89748
TU111944 lncRNA upstream 524608 39464432 ~ 39465633 (-) True G89749
AMCG00021913 mRNA downstream 113267 38819411 ~ 38826295 (-) True AMCG00021913
AMCG00021908 mRNA downstream 694525 38238138 ~ 38245037 (-) True AMCG00021908
AMCG00021909 mRNA downstream 714958 38180080 ~ 38224604 (-) True AMCG00021909
AMCG00021907 mRNA downstream 981029 37957755 ~ 37958533 (-) True AMCG00021907
AMCG00021906 mRNA downstream 1704721 37212616 ~ 37234841 (-) True AMCG00021906
AMCG00021920 mRNA upstream 104961 39044785 ~ 39052673 (-) True AMCG00021920
AMCG00021919 mRNA upstream 251074 39190898 ~ 39192682 (-) True AMCG00021919
AMCG00021917 mRNA upstream 269191 39209015 ~ 39234436 (-) True AMCG00021917
AMCG00021918 mRNA upstream 316057 39255881 ~ 39276056 (-) True AMCG00021918
AMCG00021916 mRNA upstream 343446 39283270 ~ 39285802 (-) True AMCG00021916
TU111784 other downstream 541807 38395571 ~ 38397755 (-) True G89611
TU111771 other downstream 655707 38261387 ~ 38283855 (-) True G89598
TU111619 other downstream 2251920 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 2501212 36415039 ~ 36438350 (-) False AMCG00021895
TU111504 other downstream 2992578 35943752 ~ 35946984 (-) True G89368
TU111863 other upstream 316055 39255879 ~ 39259804 (-) False AMCG00021918
TU111960 other upstream 546009 39485833 ~ 39486288 (-) True G89765

Expression Profile