RNA id: TU111862


Basic Information

Item Value
RNA id TU111862
length 579
lncRNA type inter_gene
GC content 0.46
exon number 4
gene id G89688
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 39255878 ~ 39258480 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TACCTCAGCAAAGAAGTAACAGTTTCCTCTTGTTCCATAGGTCAGAGCTGGCCTCCGGCTCAGCCAACCACAATCTGATATGATGATGTAATCAATGTCAGAAAAGAAGGTGTCTTTCCGTTGAGAAACCATAGCATCCAGGCCATTGGATCCAGTTTCCTCCATTCCTTCAATGATGTACTTCACATTGACAGGGAGTTCGATGTTCAGAGCCTGATATGCTTCGACTGCATGAATCCAGGCAAGAACTGGAGCTTTGTTATCAGATGCCCCTCTTCCATGCAGATTACCATTAATATCAGTCAGGTTGTAAGGCTCTGTTGCCCACCCATCCTCCTGTTTAGCAGGCTGGACATCAACATGGCCATAAACACAGACTGTCCgcttcttggggtcattcccaAACTGAGCTGTGACAACTTTCGGaagaggaattattttgccattGGGTAGCTCCTGATTACCAATATCCACCAAGTCCACTTTCCCACCCATTTTTCTGAGTTTCTCTGCAGTGATTTCCATCATTTTTTCCACTTCAGGTCTCTTCAGCGCATCACTGGAATCACTCTCCACAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111860 lncRNA upstream 25732 39229831 ~ 39230146 (+) True G89686
TU111845 lncRNA upstream 49479 39202277 ~ 39206399 (+) True G89672
TU111810 lncRNA upstream 387521 38867663 ~ 38868357 (+) True G89637
TU111807 lncRNA upstream 400729 38853966 ~ 38855149 (+) True G89634
TU111799 lncRNA upstream 730200 38525425 ~ 38525678 (+) True G89626
TU111873 lncRNA downstream 10101 39268581 ~ 39269897 (+) True G89695
TU111882 lncRNA downstream 24378 39282858 ~ 39284151 (+) True G89700
TU111886 lncRNA downstream 28495 39286975 ~ 39292210 (+) True G89703
TU111887 lncRNA downstream 34284 39292764 ~ 39293383 (+) True G89704
TU111888 lncRNA downstream 34921 39293401 ~ 39293717 (+) True G89705
AMCG00021914 mRNA upstream 390259 38855826 ~ 38865619 (+) True AMCG00021914
AMCG00021912 mRNA upstream 858204 38395806 ~ 38397674 (+) True AMCG00021912
AMCG00021910 mRNA upstream 1113719 38137122 ~ 38142159 (+) True AMCG00021910
AMCG00021911 mRNA upstream 1134306 38120324 ~ 38121572 (+) True AMCG00021911
AMCG00021900 mRNA upstream 2598157 36650232 ~ 36657721 (+) False AMCG00021900
AMCG00021915 mRNA downstream 100238 39358718 ~ 39369622 (+) True AMCG00021915
AMCG00021927 mRNA downstream 201779 39460259 ~ 39461475 (+) True AMCG00021927
TU111805 other upstream 433193 38817872 ~ 38822685 (+) True G89632
TU111747 other upstream 1104829 38121257 ~ 38151049 (+) True G89578
TU111748 other upstream 1104829 38121257 ~ 38151049 (+) False G89578
TU111415 other upstream 3288494 35964571 ~ 35967384 (+) False G89299
TU111914 other downstream 142044 39400524 ~ 39408261 (+) True G89728

Expression Profile