RNA id: TU111882


Basic Information

Item Value
RNA id TU111882
length 1267
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G89700
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 39282858 ~ 39284151 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTAGCACCaatgttttttcagaaaaagaaaaatactttggaGATTTATTAAAAGTGTcaaaaaaagttacattccTACTACAGAACAATTACTTTTTGCATTCTTAAAAATTCAACAAACAGCAGTGTCCTAGCAATGACAGTGAAGTACGGTATCTGTTAAAGAACAAATAGTATGTGTTTAAATCCTTAAAAACACATATCCAGttgataaattgtaaaatgtattttttaactttgtattgctcttacgttttgtaagtctccctggataaataataataataataataataataataatattattattattattattaataataataataataataataataataataataataataataatacattgactACATTACTTCTTCTTgtaaacattaataacaaatacaattataattatctGACCATACATATACAGCGCTGGAAAACATATTACTATAAATTCCATTCTCACAGCTTAGTTACAGTCTTATGGAGGGTGGATTAGCATTCCAGATACCCCCAGATTCTTTTTACCCAAAAAGTGAGAGCATCCCactatatagtataatatattaatatgtaatatagtaTTAACTGCTTTGCTCAACATCTTCCCACGCTCTCACACTCCTGCTTCCAAGATTTATTTGGCATTCTTGATCATCTGGGCCAATACAGTAATGTGTTTTGCCTTGAAAGAAGATGTTCTATTGATACTGGCTTCCACTCATAGTTGCACACTGTGTAGAGTAGGCTCAGTGACCTTGGAGTTGATGTTAGTTGGTCTAATTTCCTTTAGGTCTCTTTCTAAAGTTAGACTTCATTGAGGCAGTTACCATCCAACTCATCCtccattctctctctgtctcttgttCTCCATCTCCATTCACAGAGGAGAAACCTTTGACCTTGCTCGATGAACAAGGCTGAGAGTAGGCACTTCCTTCCCTACATGTGCTCTTCTCCTGCTCCTATGTTTCTGCAAAGTGAGGTAGCAACACCACAGTCATGCAGTAATTCATACCCAGAAACCATCAGGACATGTTTTCACAATAGGAGCCTGCACTTGATTCCCATTCAGGGCCAAGAGGGTCTTCTGCTGATTAGTGTAAAAATACTGCTTCAGTTGCtcctttatattgtttttaagcaCATTCTTCAAGCCCCTctgtaatgaaaaaatgaaaacattttagctgggattgaataaatacaaaatgtagtcATTATATATTAGGGATAGATAACATGGCCATATGTT

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111873 lncRNA upstream 12961 39268581 ~ 39269897 (+) True G89695
TU111862 lncRNA upstream 24378 39255878 ~ 39258480 (+) True G89688
TU111860 lncRNA upstream 52712 39229831 ~ 39230146 (+) True G89686
TU111845 lncRNA upstream 76459 39202277 ~ 39206399 (+) True G89672
TU111810 lncRNA upstream 414501 38867663 ~ 38868357 (+) True G89637
TU111886 lncRNA downstream 2824 39286975 ~ 39292210 (+) True G89703
TU111887 lncRNA downstream 8613 39292764 ~ 39293383 (+) True G89704
TU111888 lncRNA downstream 9250 39293401 ~ 39293717 (+) True G89705
TU111959 lncRNA downstream 201682 39485833 ~ 39486893 (+) True G89764
AMCG00021914 mRNA upstream 417239 38855826 ~ 38865619 (+) True AMCG00021914
AMCG00021912 mRNA upstream 885184 38395806 ~ 38397674 (+) True AMCG00021912
AMCG00021910 mRNA upstream 1140699 38137122 ~ 38142159 (+) True AMCG00021910
AMCG00021911 mRNA upstream 1161286 38120324 ~ 38121572 (+) True AMCG00021911
AMCG00021900 mRNA upstream 2625137 36650232 ~ 36657721 (+) False AMCG00021900
AMCG00021915 mRNA downstream 74567 39358718 ~ 39369622 (+) True AMCG00021915
AMCG00021927 mRNA downstream 176108 39460259 ~ 39461475 (+) True AMCG00021927
TU111805 other upstream 460173 38817872 ~ 38822685 (+) True G89632
TU111747 other upstream 1131809 38121257 ~ 38151049 (+) True G89578
TU111748 other upstream 1131809 38121257 ~ 38151049 (+) False G89578
TU111415 other upstream 3315474 35964571 ~ 35967384 (+) False G89299
TU111914 other downstream 116373 39400524 ~ 39408261 (+) True G89728

Expression Profile