RNA id: TU111887


Basic Information

Item Value
RNA id TU111887
length 620
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G89704
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 39292764 ~ 39293383 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cagcatatCACATGATGCTAAAGATTACTACTATCAGAAATCCTGCCAcaaaccttttcttttctgatcAGGCCTGTTTGGTTTGAAGAAACCAATCATATGATGACCCAGTTTCATATTAACATATTCAAGAAGACaatttcaaaactaaaataaccaAAGACAATCTTAATTACTGAAATAATGAATACTAACACCACATTATAGATacttaaatttgtatttaaatgttacttaaatgacAGAAACAAgttgttgttctcaaagtgtacACAACAGCCACTctaacagtattttaattgtatggtATGTCTTGTGAGCAGTGATGTAATGGGGACAGACTGGTTTCACTACCTGTTTCTATATTCAGCTTgggatttttaaattttaacttCTTGTATCAGGCTCTAACGTAGGccctttgttattgtttttactttcattaAAATGACGCATGGAAAAACCTAGGAAATACCACTCTGGTCTGACTTCCTCTATCTAAACCTACGCCACTCACATGATAACTAATACCAGACTGTGTTTTCTACTTGTTGTTGAAGGCTCTAGACAGATCCTACATGAATGCACAAATCCAGACTATAAGAGATACAGAGGTCTAC

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111886 lncRNA upstream 554 39286975 ~ 39292210 (+) True G89703
TU111882 lncRNA upstream 8613 39282858 ~ 39284151 (+) True G89700
TU111873 lncRNA upstream 22867 39268581 ~ 39269897 (+) True G89695
TU111862 lncRNA upstream 34284 39255878 ~ 39258480 (+) True G89688
TU111860 lncRNA upstream 62618 39229831 ~ 39230146 (+) True G89686
TU111888 lncRNA downstream 18 39293401 ~ 39293717 (+) True G89705
TU111959 lncRNA downstream 192450 39485833 ~ 39486893 (+) True G89764
AMCG00021914 mRNA upstream 427145 38855826 ~ 38865619 (+) True AMCG00021914
AMCG00021912 mRNA upstream 895090 38395806 ~ 38397674 (+) True AMCG00021912
AMCG00021910 mRNA upstream 1150605 38137122 ~ 38142159 (+) True AMCG00021910
AMCG00021911 mRNA upstream 1171192 38120324 ~ 38121572 (+) True AMCG00021911
AMCG00021900 mRNA upstream 2635043 36650232 ~ 36657721 (+) False AMCG00021900
AMCG00021915 mRNA downstream 65335 39358718 ~ 39369622 (+) True AMCG00021915
AMCG00021927 mRNA downstream 166876 39460259 ~ 39461475 (+) True AMCG00021927
TU111805 other upstream 470079 38817872 ~ 38822685 (+) True G89632
TU111747 other upstream 1141715 38121257 ~ 38151049 (+) True G89578
TU111748 other upstream 1141715 38121257 ~ 38151049 (+) False G89578
TU111415 other upstream 3325380 35964571 ~ 35967384 (+) False G89299
TU111914 other downstream 107141 39400524 ~ 39408261 (+) True G89728

Expression Profile