RNA id: TU111888


Basic Information

Item Value
RNA id TU111888
length 317
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G89705
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 39293401 ~ 39293717 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAGACATGTGCTTAACAGAGGTAGTTTAGCTTCGACTTGGTGTGCATACCTTAAAGGTATTCTAAAACCATATTCTAGTATCACTGTTACAGGAAGTATCCTCATAGAAATGTGGTTAGTTTGAGGGTGCagtgtataaaaaaacaaaaacattttattcagttttggtTGGATACTGATGTGGTGACATGATGCCAATATCATTtagctttacattttaagaaatataaggGAATTAATACTGTATTGCTTAGGCCACAATACATAGGTATAACTTTAAAGCAGAATTTAACAAGTACTGCCTGATTATGGTTTGC

Function

GO: NA

KEGG:

id description
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111887 lncRNA upstream 18 39292764 ~ 39293383 (+) True G89704
TU111886 lncRNA upstream 1191 39286975 ~ 39292210 (+) True G89703
TU111882 lncRNA upstream 9250 39282858 ~ 39284151 (+) True G89700
TU111873 lncRNA upstream 23504 39268581 ~ 39269897 (+) True G89695
TU111862 lncRNA upstream 34921 39255878 ~ 39258480 (+) True G89688
TU111959 lncRNA downstream 192116 39485833 ~ 39486893 (+) True G89764
AMCG00021914 mRNA upstream 427782 38855826 ~ 38865619 (+) True AMCG00021914
AMCG00021912 mRNA upstream 895727 38395806 ~ 38397674 (+) True AMCG00021912
AMCG00021910 mRNA upstream 1151242 38137122 ~ 38142159 (+) True AMCG00021910
AMCG00021911 mRNA upstream 1171829 38120324 ~ 38121572 (+) True AMCG00021911
AMCG00021900 mRNA upstream 2635680 36650232 ~ 36657721 (+) False AMCG00021900
AMCG00021915 mRNA downstream 65001 39358718 ~ 39369622 (+) True AMCG00021915
AMCG00021927 mRNA downstream 166542 39460259 ~ 39461475 (+) True AMCG00021927
TU111805 other upstream 470716 38817872 ~ 38822685 (+) True G89632
TU111747 other upstream 1142352 38121257 ~ 38151049 (+) True G89578
TU111748 other upstream 1142352 38121257 ~ 38151049 (+) False G89578
TU111415 other upstream 3326017 35964571 ~ 35967384 (+) False G89299
TU111914 other downstream 106807 39400524 ~ 39408261 (+) True G89728

Expression Profile