RNA id: TU111914


Basic Information

Item Value
RNA id TU111914
length 6149
RNA type TUCP
GC content 0.44
exon number 2
gene id G89728
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 39400524 ~ 39408261 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGAAGGGTTTTAACTTTGAGCTGTTTCCTCTGAGGAGCTTGTAGGGAATATGAATAAATAGTCTTAAAGAAAActagcatttttttattgtcactTGGCCAATATTTCTCAGTTCTCACTACTAAGAGACATTGGAAAGTGAAAGTATCTGTGGTCCTATTTTTCTAAACACGGACACTGCAGACAAGacaaataactatatagcctacaataagcaaaaagctcaaaaacagcattcaataagggaatgaaacaagtgtaaacgtaaatattggaataatgctaatactaataatattttatagttaaaaaataactattgcattcatcaaaacatttaacactgtgtaaactttgttttcaacatacaaagctacagtgaataaaatcagtgtatttcaataaactatttactatatatttagcctgcatacctgacagctggGGACAGTCCACaaaggacacgtttctgcactttctgagctcgtacctcacactgcttactgcagccctctccaggtgaacacttttactccatgaatatatagcattgcaataaatgctcctccgctgataatgtccatgaatcattattgtGTGTGcgatgtgctgcgctattgcactctgtactatgtgcagtagcaaacgcatattgatcagtagagtaaaagcactcggtgccatttggacctggcgtttcactcgtagttttcacaacactggcacaaacccacgaatgatctgtcattcccagtatcactgatgcccctgaatcagtcatgttcatatacacggcatgtccaaaacgagctctcttcaatctccatttccaatccatgtttatttgcggtcCACTCAactctgactacagttgtaagaaaacacctgtaatgctgtacaatgagtgtgtttttcaagcagtagacaggtagagatcaccACTTGAGCACCAGAGCGCATGTAGATTGTCTGCTCCTGGCAGATTGCCGTTCATGTCAAAATAACGTGTCAAAAAATCCGAAATCTATCTGAAAATGCGCATACAGGAATCAATAAGCAGAATcgaaattttaattttataacaaGTATCAGATTCCTCACCTTAAGTATCCGATTCCAGAATTGGAATCGATTTTTGATTCCCAACCCTACCAAGGATATGCATCCCCAGatcatcactgacccaccgccaaaccggtcatgctggatgatgttgcaggcaacATAACATTCACCTTggtgtctccagactctttcacgtctgttacatgtgctcagtgtgaacctgccctcatctgtgaagagaacggagCACCAATGGccgacctgccaattctggtgttttctggcaaatgccaatcAAGCTGtacagtgctgggctgtgagcacaggtcccactagaggacatcgggccctcatgccaccctcatggagtctgtttctgacagtttggtcagaaacatgcataCCAGTAGCccactggaggtcattttgtagggctctggcagtgctcctcctgttcctcctcgcacaaaggagcagatactgGTCCTGTTGCTGGGCTGacgcccttctacggccctgtccagctctcctcgtgtaatggcccgtctcttggtatctcttccatgctcttgagactgtactgggagacacagcaaaccttcttgcgacggcacgtatggatgtgccatcctggaggagctggactacctgtgcaacctgaatgggctgcaggtactgcctcatgctaccagtagtgacaaggacattagcaaaatgcaaaactagagaagaatcagtcaggaaggataaggagagagcaattgtctgtggccaccacctgcaaaaccattccatttttgggggttgtcttgctgttgcctctccagtgcaccaaaacaggtgacattgattcacaattgcttaggcttcctaactggacagattgatatccctgaagtttaattgacttggtgttatactgtgatgattacgtgttcccttaattgtttttagcagtttattaatgtatactaagttgacattttaaagctaggtgttaaaaaatgtgtgcatacatttatttgtatatatatacttttaccTAAACCTTTGCAGAGAATCCTGCTCTCCAGATGAAAGACATTGTGAACGCAAAAGAAGGAAATTGATTGTTTCAGAAGCTGATAAACTATTTGCACATGGTTACAACAGAAAATAtggtgaaaaaacattttacagtgaaAAACTGATTTATCTAAAAACTACAGGCTTTGCCATTGGTCAGAGAATTAATCCAAAAAATTGTaccatttcaaatcaaaagggGTATGTTTGGATCTCTACAGATTTGAATTATTAATCCACTTCATATGTGTGATGTATTACAAAAGGAGTTATTTCTTGAGCATGACCCACATTTTAACAATGAATTGACATTCATTATTTGCtatatttcagttgttttattgcaattttttaacatgcaatgtTCTCTGTGAATTGATAATTCAAGGCTGCAGTATTAAAATATCTTCAAAAAAGCCAAGCTATTTTTCTGTAAGTTTCCACATCCATTATTTCATATTCTGAAATGTGTGAGGGGAAAATGCCAGGATTGGAGGCATTTAATGTAAAGTACCCATACATGTACCAACATGAGAGATGCATGTCACAAAGCTGGGAGAGCAACATGGTAGACCAAGGGGATTATCACTGAAAACACATCACTGCCTGTTCAATTCAACACAACGCCTCTATGCTGTATTGGAAAAGCAAATACAGAACAGGAGCAATTTGTTATTGATCCACTAGAAGTTGCAGGAGGTATTCTGCAGTATTTCTCTAGCCATCAATCCAAATGCTTTCAACAAAGTGCTGACTATAATAAAGTGTATTATAATAagttatgttttggttttgtattgcAGTTTGTGTGGTGTAagtggtgtttgtgtgtctctaaCCTCTGATTATAGTGGAATATAATGTGTGGGCAGAGAGCaacaatattgtgtttaagATAGAAAGCTAATTGtgttacattatacatttagcAACTTACGGAGCACACTCGACTCGACATGCCCTGTCTgtaatcagaagcgttacactgtaggctgcgattatttagcatttattttgcattactacgagctattgttcagtgtaactttaTGTGTCTGgtactgtctttgtctgtattcagatattaagcggccattaattgtgctattagcagtcctgcatggATGGGAGGgacatcctgaccagccttgtgtcattcaacgcaacacaggtcacaaacctacaacgtgcgccctggaccctctctCTTCTCGTCTCCTCCAAGCAGCCACACCTgacctcctccctcctcaactcctcactcctctctggctgtttcccctctgcatttaaacaagctgctgtcatcccactcctcaagaaaccaacccttgaccccacctctaccgccctgtctccctactccccttcctctcaaagactctcgagcaggcggTCCACCGTtagctctctgcctttctgtcccatcattcactcctggatcctctgcaacccggcttccgcacagctcactccactgagacggctctcctggcagtcactgactccccccggtgtgctcgggcggcctccctctcctcagtcctcatcctccttgatctctctgcagcatttgacactgtcgatcactccatcctcctctcctgcctcgctcaCCTCGgtatctctggaactgctctcacctggttctcctcctacctcagtgaccggtcctaccaagtgacatggcgaggttcctcatccaccccccaacctctcctcatagacgtaccccaaggctccctcctgggcctgctcctgttctctctctacacttgctccctgggccccctcattgcttcccaccacttctacgctgatgatgcccagatctttctgtcttttccctcttctgaccctctcatcccctctcgcatctcttcctgcttgtctgctatctccgcctggatgtactcgcaccacctcaagctcaacctctccaaatcggatctcctctttttcccccactcttcctcaccttctgctgatctctccatctcagtccccttggaatccaccacactctctccttctttttcCGCTAAAAATCATCcttgatcctgtgctctcctacacccagcacatcaccacactgacacgcacctgcagattcttcctgagcaacatacgccaaatccgtcccttcctcaccgactactcgactcagctgctcgtccagtccctggtcctctcccgcctggactactgcaactccctcctggccggcctgcctgcaactactacccaccgctccagctcatccagaactctgcggcttgtctggtattctctctgccccgattcgcacatgcttctccactgctccgctccctccactggctcccgataccggcacgcattcagttcaagacattgaccctcacctaccgctgtctcgaccacactgcaccaagttaccttcagaccctcgtctctacatacattccctccagaccactgcgctcttctagtgccagaagactaactctgcctcctctccactccccttcctccagaacctgctccttctcatccctggcccctaaatggtggaacgaccttcccactgtagcgttaagggggggtgtattttgatagagcattctagctctgagctgaagcagacctctcccccaaagttatcagatttcctgagctcatcggcacatgaactgttctatatcaaagtggcagtcttgggaggatggcaccgagaatgggccaaatggcctGGAATCCCTGGGCGATTCGGGGGAATATGGCCTGGAGgtcataaaactctttgaagtggacgagagccgaaatccagacacagagctacgaacccaggccaaccggcatttccaaaagatggcatggattgacatcagtcataaatcgagcctcctccaataggacactgggggctgaaaccaaaATCTAATCTCACAAACTTAAGAACCAatcgtctattgatctgacaggtgTTTAAAAGCTAGCGCAcgacatctctctctctcacccgaaccgataactcgctgccacagctcaacttgtagctctgttgccagaaccggaaccggaaaccaaccaagtctttgccagcaacagaagagttaaactgggagaaggagattgagccgtacgaataattattttaaaggtctttattcagttaaagaactttagaaactgcgcatgcccacctgtacccatctgatcagtggagttttacagctggacgaaagtattcagtcatttaaatagctattgagtcttaagaaacttgacccttggaaacgaacagggccctgctttcctcaaagactttgtcttcaagtaactacggtggaaaccctgcttgcaaagattttgtgcacaaccttggagccttcaaaccagtggacaatctgtttggaaaagactctacattcgcgaaaccccaacttccaggagcatcgactgATTgaaagttattggacaaagccgaaccggactgcctttgttccaaaccacacggaccttgagccgtgtgtttttatttgagcccgaagacagagaggcctctctgcgacgaagttcagataagttaaCAGttggagtttatcattcatgacatttgagaaatcagttagaaatgttattctgtgagtcagaaaactttagaatgtgtaatatcatttagtattttcttaaatataaatgtgtgttgcattaaactgttttgtttgataattttataaataaaacctgtcaacgcagagaaatatcttctcattcctgtttaactgtttagtctgaaattgacacacattaatagacactagattattggtggccctgcctGTCCTttatcattgaacagtaatcaattaaggagaattgtggtaacaagaaattataGGATCTTTCTCAGCACCCAagcgtaaatgagactgatatatatataacgagaagttatttgacttaaatactaacctacgttagttatttaatgtccgactaacaatactaatgagagactcaccttcgtcttaN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111888 lncRNA upstream 106807 39293401 ~ 39293717 (+) True G89705
TU111887 lncRNA upstream 107141 39292764 ~ 39293383 (+) True G89704
TU111886 lncRNA upstream 108314 39286975 ~ 39292210 (+) True G89703
TU111882 lncRNA upstream 116373 39282858 ~ 39284151 (+) True G89700
TU111873 lncRNA upstream 130627 39268581 ~ 39269897 (+) True G89695
TU111959 lncRNA downstream 77572 39485833 ~ 39486893 (+) True G89764
AMCG00021915 mRNA upstream 30902 39358718 ~ 39369622 (+) True AMCG00021915
AMCG00021914 mRNA upstream 534905 38855826 ~ 38865619 (+) True AMCG00021914
AMCG00021912 mRNA upstream 1002850 38395806 ~ 38397674 (+) True AMCG00021912
AMCG00021910 mRNA upstream 1258365 38137122 ~ 38142159 (+) True AMCG00021910
AMCG00021911 mRNA upstream 1278952 38120324 ~ 38121572 (+) True AMCG00021911
AMCG00021927 mRNA downstream 51998 39460259 ~ 39461475 (+) True AMCG00021927
TU111805 other upstream 577839 38817872 ~ 38822685 (+) True G89632
TU111747 other upstream 1249475 38121257 ~ 38151049 (+) True G89578
TU111748 other upstream 1249475 38121257 ~ 38151049 (+) False G89578
TU111415 other upstream 3433140 35964571 ~ 35967384 (+) False G89299
TU111425 other upstream 3433140 35964571 ~ 35967384 (+) True G89299

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU354497 True 5046 lncRNA 0.41 2 CI01000095 5122082 ~ 5127163 (-)
rainbow trout (Oncorhynchus mykiss) TU1085257 True 1025 TUCP 0.54 2 NC_048575.1 18769814 ~ 18771583 (-)
mexican tetra (Astyanax mexicanus) TU407371 True 843 TUCP 0.57 1 NW_019172826.1 2728308 ~ 2729150 (-)