RNA id: TU111944


Basic Information

Item Value
RNA id TU111944
length 1202
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G89749
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 39464432 ~ 39465633 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gcagtttattttttttattttttatgccgTGATTTTGAACAGATGTACACAATGGTGGAAGACTTAAAACTATAGACCTGATACCAgctacatttaataattgtactAAATCGCAGAAACGCAGTACTCTGCTCTTCCCTGCTCTGTGAAGTAACGTGAGAGGGGAAAGTAGCTGATGTTATCTATTTAATTAGCCATGTTATCTGCCAATAGTATTTATTTCACCAGTGCTAAACACGCTAACTCTTAGCTTGTTGCAAATGTTCATTTCAAGACAGCGTTACCTTGAATCTAGCCAAGAGTGACGGGAGGTGCTCCCGTAGATGGGATATCATATTTGACGTATTGCCTCCTCTAGCAGCCACTCTTCTTAAACACATCTTACATGTTTTCGATACCTGAAAAATTCCCATACTGCAGACTTCGTCTCTTTCGACTGGAGAAAAAGTTCCAGGGGTTCACCTCCTTCGTCCATCCTACACACAGGTGACTGACTGCTCGAACCAACCCGAGGGGAGGGGTCATGTTACTCTCTACGCTGCACACAACCTGAGGGATTCCTGCAGTTTCCGTCTTTGacaagacataaaaaaacaagggcagtaatgttcagactgtacaatgcactagtaagagctcatctggaatactgtgttcagttctgggctccacacttcaagaaagatattgctgctctagaggctctagagaggagagcaaccagacttattccaggtctgaagggaatgtcctactgagagactgagggaactgaaccttttcaccctggaacagagaagactacgtggggacttgatccaagtcttcaaaatcatgaaaggcatcgatcatatcaaaccagaggagcttttccagatcagcagggacacacgcaccctgggacacaaatggaaattgggcttcaaggcattgaagatggaaaacaggagacacttcttcatacagagaggcgtcacaatctgaacaaactccccagcgatgtggttgaagctgaaaatgtgggaacatttaaaaatagactagataggatccttggatcacttggttactAATAGACACCAAACAAGTACGATTAGTTGAgcggcctcctctcatttgtaaactttcttatgttcttatttcttatgagtaagaaaacaaaatctcagaaaatattgacaattatgacattctggaaccag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111943 lncRNA downstream 1511 39462475 ~ 39462921 (-) True G89748
TU111909 lncRNA downstream 78350 39385818 ~ 39386082 (-) True G89724
TU111908 lncRNA downstream 78756 39383649 ~ 39385676 (-) True G89723
TU111901 lncRNA downstream 130307 39333925 ~ 39334125 (-) True G89716
TU111830 lncRNA downstream 524608 38939562 ~ 38939824 (-) True G89657
TU111946 lncRNA upstream 3132 39468765 ~ 39470104 (-) True G89751
TU111971 lncRNA upstream 21264 39486897 ~ 39489033 (-) False AMCG00021924
TU111975 lncRNA upstream 80308 39545941 ~ 39546146 (-) True G89776
AMCG00021923 mRNA downstream 15704 39444488 ~ 39448728 (-) True AMCG00021923
AMCG00021926 mRNA downstream 41056 39420257 ~ 39423376 (-) True AMCG00021926
AMCG00021922 mRNA downstream 90975 39371806 ~ 39373457 (-) True AMCG00021922
AMCG00021916 mRNA downstream 178630 39283270 ~ 39285802 (-) True AMCG00021916
AMCG00021918 mRNA downstream 188376 39255881 ~ 39276056 (-) True AMCG00021918
AMCG00021925 mRNA upstream 10343 39475976 ~ 39479016 (-) True AMCG00021925
AMCG00021924 mRNA upstream 22848 39488481 ~ 39548802 (-) True AMCG00021924
AMCG00021928 mRNA upstream 89874 39555507 ~ 39556745 (-) True AMCG00021928
TU111863 other downstream 204628 39255879 ~ 39259804 (-) False AMCG00021918
TU111784 other downstream 1066677 38395571 ~ 38397755 (-) True G89611
TU111771 other downstream 1180577 38261387 ~ 38283855 (-) True G89598
TU111619 other downstream 2776790 36678527 ~ 36687642 (-) False AMCG00021897
TU111563 other downstream 3026082 36415039 ~ 36438350 (-) False AMCG00021895
TU111960 other upstream 20200 39485833 ~ 39486288 (-) True G89765

Expression Profile