RNA id: TU111959


Basic Information

Item Value
RNA id TU111959
length 1061
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G89764
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 39485833 ~ 39486893 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

acaacgaccctaagcacacagccaagatgaCAAAGCAGTGGTTACAGGACAACTTTGAACTCTGACTCTCtgactctgtgaatgtccttgagtggcccagccagagcccagactttgAACATCGATTGAACATctcgattgaacatctctggagaaatctgaaaatggctgtgcaccgacgctccccatccaacctgatggagcttgagaggtcctgcaaagaagaatggaagaaactgcccaaaataggtgtgccaagcttgtagcatcatactcaaaaagacttgaggctgtaattaatgccaaaggtgcttcaacaaagtattgagcaaaggctgtgaatactttgtacatgtgctttttttgttttttatttttaataaatttgcaaagatttcaaacttttctttctttcattatggggtattgtttgtagaattttgaggaaaataattaatttaatccattttggaataaggctgtaacataacaaaatgtggaaaaagttaagcactgtgaatattttccggatgcactgtagggCTAGATTCCTTTATTctatgtaaacacatttttgttttatttaatttgatggaatcatctaattaatttaaacttaatGTCACTATTTAATCTCATGAATGTTCTTGCAcactaaaattaaacattatttatactGTAAAAGGTGTTTGTGGAAAGTGAATTAACATTAAGCTCTTATTTGAAAGACCTCAGCATGAATGACcaataaattgtgtaattttaatgtCCCTTCTCTAAGCTTGATCAATATAACTTATAAGTATAGTTGAATctatatgtatttcaataattaatctgaataacattgtttcaacaCAAGGGTTTGAACTGAGCAAgtaatcaaaacataattttccGTTATTGGAACACCAGAAGTTTCAACTATCTGAAAACTTTTCTGATattgttatcatttttattaatggtGACATAACTGTTCCATGGTCTTAAGTTATTGTGAATTTATCATTAAACTAATGGAAGAATAAGCAAAGGTGTTCTTGGTatgaatacaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU111888 lncRNA upstream 192116 39293401 ~ 39293717 (+) True G89705
TU111887 lncRNA upstream 192450 39292764 ~ 39293383 (+) True G89704
TU111886 lncRNA upstream 193623 39286975 ~ 39292210 (+) True G89703
TU111882 lncRNA upstream 201682 39282858 ~ 39284151 (+) True G89700
TU111873 lncRNA upstream 215936 39268581 ~ 39269897 (+) True G89695
AMCG00021927 mRNA upstream 24358 39460259 ~ 39461475 (+) True AMCG00021927
AMCG00021915 mRNA upstream 116211 39358718 ~ 39369622 (+) True AMCG00021915
AMCG00021914 mRNA upstream 620214 38855826 ~ 38865619 (+) True AMCG00021914
AMCG00021912 mRNA upstream 1088159 38395806 ~ 38397674 (+) True AMCG00021912
AMCG00021910 mRNA upstream 1343674 38137122 ~ 38142159 (+) True AMCG00021910
TU111914 other upstream 77572 39400524 ~ 39408261 (+) True G89728
TU111805 other upstream 663148 38817872 ~ 38822685 (+) True G89632
TU111747 other upstream 1334784 38121257 ~ 38151049 (+) True G89578
TU111748 other upstream 1334784 38121257 ~ 38151049 (+) False G89578
TU111415 other upstream 3518449 35964571 ~ 35967384 (+) False G89299

Expression Profile