RNA id: TCONS_00000074


Basic Information

Item Value
RNA id TCONS_00000074
length 3267
RNA type mRNA
GC content 0.47
exon number 22
gene id XLOC_000037
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 1805294 ~ 1815660 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTTCTGTCTCCAATCGGCTCCACCACAGGAGGACTATCCTGACTCCCCAAATCACTGCATTTTGGGTGAAAAATGGGGCTTGTGACAGGGAATGATGAGTATAAGTTGGCGGCGACTTCAGAAGATGGAGTCAAAAAGcctaaaaaagggaaaaagaacAAAAAGGACATGGACGAACTGAAGAAAGAAGTGGAAATGGATGATCACAAACTGACATTGGAGGAGCTCAGCAGGAAATATGGAACTGATCTGAACAAGGGTTTGTCCATTACTCGAGCAAAGGAAATCTTAGCACGGGATGGACCAAATGCCCTGACTCCCCCTGTTACGACTCCAGAATGGGTGAAGTTCTGCAGGCAGCTCTTTGGTGGATTTCAGACTCTGCTGTGGATTGGTGCATTGCTCTGCTTCTTTGCATATTCGATCCAGGCTGCCTCAGAAGAAGAACCGGCGAATGACAACCTTTACCTGGGACTTGTTCTTGCTTTTGTGGTCACAGTCAATGGATGCTTCTCATACTATCAGGACGCAAAGAGCTCCAGAATCATGGATTCATTCAGGAACCTTGTTCCTCagAAAGCCCTGGTTGTGCGTGATGGAGAAAAAAGTGTAATAGATGCAGAAGACGTAGTTGTGGGTGATCTTGTAGAGGTCAAAGGTGGAGACAGAATACCAGCTGATGTTCGAATCGTATCTTCACAAGGATGCAAgGTGGACAACTCTTCCCTCACTGGAGAATCTGAGCCCCAAACTCGTGCTCCTGAAATGTCTAGTGACAACCCACTGGAGACCAGAAACATCGCATTTTTTTCTACCAACTGTGTTGACGGTGCTGCCAGAGGGGTTGTCGTCAACACCGGTGACCGCACTGTCATGGGTCGCATTGCATCTCTTGCCTCCAGCCTGGAAGGTGGACAAACACCAATTGCTAGGGAGATCGAGCACTTCATCCACATCATCACTGGTGTAGCTGTTTTCTTGGGTCTGACCTTCTTAGTCCTGTCGCTGATCCTTGGCTACAACTGGTTGGAGGGCGTCATTTTTCTAATAGGAATCATTGTCGCTAATGTACCTGAAGGTCTCCCTGCTACTGTAACTGTGTGTCTGACTCTCACTGCCAAACGAATGGCGAAGAAGAACTGCCTGGTGAAGAATCTTGAAGCTGTGGAGACTCTTGGATCGACCACCACCATTTGCTCGGACAAAACTGGAACTTTGACCCAGAACCGGATGACTGTTGCTCACATGTGGTTCGACAACCATATACATATAGCCGATACCACAGAGAACCAGACTGGAGCCTCATTTGACAGGAGCTCAGCTACTTGGTCTGCTCTCGCACGTGTTGCTGGCCTTTGCAATCGTGCCGTCTTCCAGTCAAATCAGAGCCACATTCCAGTGCTTAAGAGAGACACAGCTGGTGATGCCTCAGAGTCTGCGCTGCTCAAGTGTATTGAGCTGTCTTGTGGTTCAGTTGCTGAAATGAGAGAAAACTACACAAAGCTTGCAGAAATCCCGTTCAACTCCACTAACAAGTATCAGGTTTCAATCCACAAGAATCCCAATTCCTCAGAACCAAAACACTTGCTGGTGATGAAGGGAGCACCTGAGAGAATATTGGAGCGCTGCTCCACCATTTTAATTCAAGGAAAAGAGCAGCCTATGGATGATGAAATGAAAGATGCTTTTCAGAATGCTTATTTAGAACTTGGAGGTCTTGGAGAAAGAGTCCTGGGCTTCTGCCACTTCTGCCTTCCCGATGATCAGTTTCCTGAGGGTTTTGCATTTGATACTGAAGAAATGAACTTCCCTACTGAGAACCTGTGCTTTGTTGGCCTCATGTCCATGATTGATCCTCCTCGTGCCGCTGTACCAGATGCTGTAGCCAAATGCCGGAGTGCTGGAATCAAGGTAATCATGGTTACTGGTGACCATCCGATCACAGCAAAGGCTATTGCAAAAGGTGTCGGCATCATCTCAGAAGGCAATGAGACAGTGGATGACATCGCTGCTCGGCTGAAAATCCATATCGATGAGGTGAATCCAAGAGATGCTAAAGCCTGCGTGATCCATGGAGGAGAACTGAAAAATATGACAGATGAACAGCTGGATGACGTCCTTCAACATCATACAGAAATTGTGTTCGCCAGAACGTCTCCACAACAAAAGCTGATCATTGTGGAAGGATGTCAGCGACAGGGTGCCATTGTAGCCGTAACCGGTGATGGAGTCAATGATTCTCCAGCTCTGAAGAAGGCTGACATTGGTGTGGCTATGGGTATTGCTGGATCTGACGTATCCAAACAGGCTGCTGACATGATCCTTCTGGACGACAACTTTGCCTCAATTGTCACCGGAGTAGAAGAAGGTCGTCTGATCTTCGACAACTTGAAAAAATCCATTGCCTACACATTGACTAGTAAGATCCCGGAGATGTCACCCTTCCTCATGTTTGTCCTTGTTGGTATTCCTCTACCTTTGGGCACCGTCACCATTCTCTGCATTGACCTGGGCACTGACATGGTTCCTGCAATCTCATTGGCTTATGAAACTGCTGAAAGTGACATCATGAAGAGACAACCCAGAAATGCTGCAACCGATAGGCTGGTGAATGAGAGGCTGATTAGTGTGAGCTATGGTCAAATTGGCATGATACAAGCAGTTGGCGGGTTCTTTACATACTTTGTGATTCTTGCTGAGAATGGCTTCTTGCCCTACGATCTGGTGGGAATTCGAGTTGGTTGGGAAGACAGATTTCTTAATGACCTGGAAGACAGCTATGGCCAGCAATGGACCTATGAGAGCAGAAAGATTGTGGAGTACACATGCCACACAGCCTTCTTTGCCAGTATTGTGATTGTGCAGTGGACTGACCTGTTAATCTGCAAGACCAGAAGACTTTCCATCTTCCAGCAGGGAATGAAGAACCGGGTCCTCACCTTTGGTTTGTTGGAGGAAACTGCTCTGGCAGCATTCCTGTCCTACTGCCCAGGCATGGAAGTTGCTGTCAGAATGTATCCACTGAAACCTTTGTGGTGGTTCTGTGCCTTCCCATATTCGCTACTCATTTTCATATATGACGAAGTTAGAAAATATATCCTCAGGCGAAACCCAGGAGGCTGGGTGGAAAGAGAAACATACTACTAAAGCCAGAAGACGCTCTCTTGGGAACATGTGCAGGGAGAGATTGTATAATTTGTTAAATATCTAAATTAAtgtcattttaagattttaaatgtgACAGTTTAATAAATGAGAGGAGTTTA

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005391 sodium molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008556 potassium transmembrane transporter activity, phosphorylative mechanism molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-001212-3 Predicted to enable P-type sodium:potassium-exchanging transporter activity. Predicted to be involved in cellular monovalent inorganic cation homeostasis and inorganic cation transmembrane transport. Predicted to act upstream of or within potassium ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in neuromast mantle cell; neuromast support cell; and pronephric duct. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 2DD. Orthologous to human ATP1A1 (ATPase Na+/K+ transporting subunit alpha 1).

Ensembl:

ensembl_id ENSDART00000103850

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000073 lncRNA upstream 12771 1790772 ~ 1792523 (+) True XLOC_000036
TCONS_00000071 lncRNA upstream 73810 1730392 ~ 1731484 (+) False XLOC_000036
TCONS_00000065 lncRNA upstream 99414 1705130 ~ 1705880 (+) True XLOC_000035
TCONS_00000064 lncRNA upstream 114269 1690047 ~ 1691025 (+) False XLOC_000035
TCONS_00003013 lncRNA upstream 185980 1617203 ~ 1619314 (+) False XLOC_000034
TCONS_00000077 lncRNA downstream 83249 1898909 ~ 1899843 (+) True XLOC_000039
TCONS_00003015 lncRNA downstream 186056 2001716 ~ 2005632 (+) True XLOC_000043
TCONS_00002808 lncRNA downstream 207749 2023409 ~ 2023645 (+) True XLOC_000044
TCONS_00000101 lncRNA downstream 480931 2296591 ~ 2299546 (+) True XLOC_000048
TCONS_00003016 lncRNA downstream 1903006 3718666 ~ 3720603 (+) True XLOC_000053
TCONS_00000072 mRNA upstream 8462 1789357 ~ 1796832 (+) False XLOC_000036
TCONS_00000066 mRNA upstream 73730 1712140 ~ 1731564 (+) False XLOC_000036
TCONS_00000063 mRNA upstream 99135 1689775 ~ 1706159 (+) False XLOC_000035
TCONS_00000062 mRNA upstream 190794 1599979 ~ 1614500 (+) True XLOC_000033
TCONS_00000059 mRNA upstream 834343 961607 ~ 970951 (+) True XLOC_000027
TCONS_00000075 mRNA downstream 22504 1838164 ~ 1850104 (+) True XLOC_000038
TCONS_00000076 mRNA downstream 81077 1896737 ~ 1899848 (+) False XLOC_000039
TCONS_00000078 mRNA downstream 88759 1904419 ~ 1911381 (+) True XLOC_000040
TCONS_00000079 mRNA downstream 100307 1915967 ~ 1923253 (+) True XLOC_000041
TCONS_00000080 mRNA downstream 125371 1941031 ~ 2000357 (+) True XLOC_000042
TCONS_00000069 other upstream 11923 1718611 ~ 1793371 (+) False XLOC_000036
TCONS_00000070 other upstream 72968 1719207 ~ 1732326 (+) False XLOC_000036
TCONS_00000068 other upstream 82137 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000067 other upstream 86767 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000061 other upstream 229731 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000094 other downstream 375040 2190700 ~ 2214397 (+) False XLOC_000046
TCONS_00000098 other downstream 456601 2272261 ~ 2288773 (+) False XLOC_000048
TCONS_00000099 other downstream 459945 2275605 ~ 2275742 (+) True XLOC_000049
TCONS_00000100 other downstream 471189 2286849 ~ 2299546 (+) False XLOC_000048
TCONS_00000102 other downstream 486298 2301958 ~ 2302623 (+) False XLOC_000050

Expression Profile

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