RNA id: TCONS_00009491


Basic Information

Item Value
RNA id TCONS_00009491
length 771
RNA type processed_transcript
GC content 0.46
exon number 5
gene id XLOC_004802
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 30046320 ~ 30220346 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTCTTACTATCAATCTATGAGAGCCCATCACTCATAGTCTAGTTCCTCCATAATACCGATTCAGATTCAGCTGCCCTGGCAGCCCAAAGCAAGTCCGCTGATGACATCATCAAATCCTCCAAGTTCCCTGCCGCTCATGCTCCTCGACCAGAAGAAACCGCAAAGATCGAGACAGACTACTGGCCGTGCCCTCCGTCCCTCGCTGCTTTAGGTTCAGATGGAAGGAGTCGATCACGggatgaagaggaggaagagcAACTGAAACGCAGACACCTTCAGGAAGAACACCTCAGCAAGATCCAGTCTGGACTTGGGAAGCTTATTCTGAAAGAGGAGATGGAAAAGGAGATGAACAGAGAGAGATATGTACGAAGTGTGGCTGCCCAGCGATTTGATTCCCAGTATGCTAACTGCACCACAGACTCTCAAACCGTTAAAACTTCATCTCTGCCTGGGTATGGACGCAATGGCCTCCATCGGCCCCAATCTACAGAACTCTCTCAATACAACAGTTATGGGGACGTTTGTGGAGGACAAAGAGGTAAATTCCAGTGCTTCTAATACAGTGACTGCATCTAATACCTAAAAAGGAAGCAATTACAGTACTTTAATAACATTCTATCTCTTTCTGATCTATACAGATTTCAAGGTATGTGACTGAGCTGCATTAGCTACTAAGCATGTGCATCAGCAGTCATGCACATATGAAGTCAAAATCATGCTACATGTAACCGGAATGGCACTCATGCCCTCATTGCTATGCTTGTGTC

Function

GO:

id name namespace
GO:0007010 cytoskeleton organization biological_process
GO:0030032 lamellipodium assembly biological_process
GO:0060271 cilium assembly biological_process
GO:0001725 stress fiber cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050327-91 Predicted to enable actin filament binding activity. Predicted to be involved in cilium assembly and lamellipodium assembly. Predicted to act upstream of or within cytoskeleton organization. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Predicted to be active in stress fiber. Orthologous to human ABLIM1 (actin binding LIM protein 1).

Ensembl:

ensembl_id ENSDART00000145628

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010948 lncRNA upstream 8681 30162754 ~ 30198532 (+) False XLOC_004802
TCONS_00010947 lncRNA upstream 14193 30153615 ~ 30193020 (+) False XLOC_004802
TCONS_00010745 lncRNA upstream 833799 29312565 ~ 29373414 (+) False XLOC_004796
TCONS_00009476 lncRNA upstream 833799 29312565 ~ 29373414 (+) True XLOC_004796
TCONS_00009458 lncRNA upstream 1261063 28933524 ~ 28946150 (+) False XLOC_004786
TCONS_00009497 lncRNA downstream 149133 30360579 ~ 30363549 (+) False XLOC_004804
TCONS_00009502 lncRNA downstream 218387 30429833 ~ 30432964 (+) False XLOC_004806
TCONS_00009503 lncRNA downstream 218414 30429860 ~ 30432964 (+) False XLOC_004806
TCONS_00009504 lncRNA downstream 219196 30430642 ~ 30432628 (+) False XLOC_004806
TCONS_00010950 lncRNA downstream 219289 30430735 ~ 30432964 (+) True XLOC_004806
TCONS_00009488 mRNA upstream 2374 30168342 ~ 30204839 (+) False XLOC_004802
TCONS_00009485 mRNA upstream 14193 30109698 ~ 30193020 (+) False XLOC_004802
TCONS_00009483 mRNA upstream 14594 30046320 ~ 30192619 (+) False XLOC_004802
TCONS_00009484 mRNA upstream 77901 30046375 ~ 30129312 (+) False XLOC_004802
TCONS_00009478 mRNA upstream 389004 29763546 ~ 29818209 (+) False XLOC_004798
TCONS_00009493 mRNA downstream 22531 30233977 ~ 30307747 (+) False XLOC_004803
TCONS_00009494 mRNA downstream 22763 30234209 ~ 30308351 (+) False XLOC_004803
TCONS_00009495 mRNA downstream 54356 30265802 ~ 30306215 (+) True XLOC_004803
TCONS_00009496 mRNA downstream 148738 30360184 ~ 30367008 (+) False XLOC_004804
TCONS_00009498 mRNA downstream 149133 30360579 ~ 30366620 (+) True XLOC_004804
TCONS_00009487 other upstream 6444 30168330 ~ 30200769 (+) False XLOC_004802
TCONS_00009482 other upstream 236584 29970513 ~ 29970629 (+) True XLOC_004801
TCONS_00009481 other upstream 247159 29959940 ~ 29960054 (+) True XLOC_004800
TCONS_00009480 other upstream 395253 29811844 ~ 29811960 (+) True XLOC_004799
TCONS_00009479 other upstream 439953 29764043 ~ 29767260 (+) True XLOC_004798
TCONS_00009507 other downstream 297837 30509283 ~ 30509399 (+) True XLOC_004810
TCONS_00009521 other downstream 514978 30726424 ~ 30756585 (+) False XLOC_004818
TCONS_00009526 other downstream 984380 31195826 ~ 31195950 (+) True XLOC_004821
TCONS_00009527 other downstream 996990 31208436 ~ 31208551 (+) True XLOC_004822
TCONS_00009554 other downstream 1705497 31916943 ~ 31917052 (+) True XLOC_004837

Expression Profile

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