RNA id: TCONS_00010953


Basic Information

Item Value
RNA id TCONS_00010953
length 817
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id XLOC_004813
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 30630019 ~ 30633002 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCTCGATTTAGCGAGTTTGGAAAACACGGTCGAAGGTACATCTCGAGAGCTGTGTTGTGGAGAGTTTCCTGACCACAGATGTTCACAGCTACTGCTGCCCTGGATGGATATTCCGAAATATCTGAAATGGTCATTTGACAGGACAAAAGCAAACCGTGTGGACAGAACTGATGTCAACTCCAGGATGACGCTGTATTCAGCAGAGCCAAAATGGAAAACACCTGTGGTGATCCTGGTGATGCTTTGTCTGCTAGGAAAACGTCTCAACATCTGGTTTCATCTGAAGACTGCAGATGGTTCCTTGTCCTTTTCTCTCACAATCCAATTATGATTGAAGAAAAGCAAGGTAGACTTTAAAGGGAATGTTGGAACTTTCCAAGGCTGCTCCTGGAACTCTCTGCTTCCACTGAGGGCTTTGATTTTAATGATATCTCAAGGCCTGTCGTCTCCTGTGTTGTTTGGATGGAGATGAACACAGTCTTTTGAGATGACCTCACAGGTTCAGAATAAGTAGCAGTCCTGTGCGATGATTCGACCCATAGGTCCTGAAGAACGGAAAAGACCTCTaatggttttttatttattgtgttaagCTCCCACACTCAAAGACCAACACTAGAAAGATAACATTTCCTATTGTTTATATCTGACAGTAATGTCTTGCAGATGTGTATTCCATTCAGTTGTGTGTTTTAAAACATTGTGTAAAGTTAGTGAGTGCTGTATGCATTCTGACTTTTTTTGTCACTTCATTAATTCATCAGGGTCTAAACTGGCTAAATAATCACTTTTCCAGTGATTGCTGGGAGCAAATAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010951 lncRNA upstream 154935 30470981 ~ 30475152 (+) True XLOC_004807
TCONS_00009502 lncRNA upstream 197123 30429833 ~ 30432964 (+) False XLOC_004806
TCONS_00010747 lncRNA downstream 3383 30636385 ~ 30651026 (+) True XLOC_004815
TCONS_00009514 lncRNA downstream 28599 30661601 ~ 30662852 (+) True XLOC_004816
TCONS_00009520 lncRNA downstream 93310 30726312 ~ 30726953 (+) False XLOC_004818
TCONS_00009525 lncRNA downstream 300849 30933851 ~ 30952692 (+) True XLOC_004820
TCONS_00010748 lncRNA downstream 642757 31275759 ~ 31276339 (+) True XLOC_004823
TCONS_00009509 mRNA upstream 11647 30586599 ~ 30618440 (+) False XLOC_004812
TCONS_00009510 mRNA upstream 41798 30586717 ~ 30588289 (+) True XLOC_004812
TCONS_00009508 mRNA upstream 62376 30563550 ~ 30567711 (+) True XLOC_004811
TCONS_00009505 mRNA upstream 100511 30498412 ~ 30529576 (+) True XLOC_004808
TCONS_00009506 mRNA upstream 113992 30501044 ~ 30516095 (+) True XLOC_004809
TCONS_00009512 mRNA downstream 20045 30653047 ~ 30681927 (+) False XLOC_004816
TCONS_00009513 mRNA downstream 20940 30653942 ~ 30681342 (+) False XLOC_004816
TCONS_00009515 mRNA downstream 72767 30705769 ~ 30711995 (+) False XLOC_004817
TCONS_00009516 mRNA downstream 72853 30705855 ~ 30712111 (+) False XLOC_004817
TCONS_00009517 mRNA downstream 73156 30706158 ~ 30709125 (+) True XLOC_004817
TCONS_00009507 other upstream 120688 30509283 ~ 30509399 (+) True XLOC_004810
TCONS_00009491 other upstream 418641 30207213 ~ 30211446 (+) False XLOC_004802
TCONS_00009487 other upstream 429318 30168330 ~ 30200769 (+) False XLOC_004802
TCONS_00009482 other upstream 659458 29970513 ~ 29970629 (+) True XLOC_004801
TCONS_00009481 other upstream 670033 29959940 ~ 29960054 (+) True XLOC_004800
TCONS_00009521 other downstream 93422 30726424 ~ 30756585 (+) False XLOC_004818
TCONS_00009526 other downstream 562824 31195826 ~ 31195950 (+) True XLOC_004821
TCONS_00009527 other downstream 575434 31208436 ~ 31208551 (+) True XLOC_004822
TCONS_00009554 other downstream 1283941 31916943 ~ 31917052 (+) True XLOC_004837
TCONS_00009570 other downstream 2318780 32951782 ~ 32951896 (+) True XLOC_004848