RNA id: TCONS_00009516


Basic Information

Item Value
RNA id TCONS_00009516
length 1469
RNA type mRNA
GC content 0.47
exon number 4
gene id XLOC_004817
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 30705769 ~ 30712111 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATGCGATGAAGAGCTAACCTGCGTAAGGTGAGGCGTGGAGGAACGAGGCGTCATGTGTTTGACGCAAAATACGAATCGTACTACGGCGAAGGACATCTCATGAATATTAAATTAGCAATACTGACGTTCGCCGACAAACGTCCAATGTCGACGGATGAGCTCGTGAATATGAATTAGGAAACGTAGCGTTGCGTTTTTAACTCCTGAATATGGAAACACCCTCGCCATAGTACGATTAGTAACAACGCGCCTCGATATCGTCTCCGTCACATCAGCTCCGCAATACAGGCAGGAGACGAACAGGAAATTATTACTCTAATACAGCTCAGAGACAATGCTTCAGTGTCTGTCGGGAAGTTCGTGTATGCGTGTCATTGACGGTTACAAGTCTACGTGGTATTTCTTAGTTCTGGTGCTGGCGTATGTTTTATATCTTATCTTCGGGGCTTTGGTGTTTTCCGCGGTGGAGCTGCCGTATGAAGAGCAGCTTCGACAAGAGCTTCGGACAGTGAAACAGCAATTTCTGGAGGACAATGAATGTCTGTCCAATGACAGACTGGAAGAGTTTCTGATCAAAGCGTTAGAAGCGAGTAATTACGGTGTGTCGGTTCTTAATAATGCCTCCAGTAACTGGAACTGGGATTTCACTTCAGCGTTGTTCTTCGCCAGCACTGTGCTTTCCACGACAGGATATGGGCACACTGTCCCTCTATCAGATGGAGGTAAGGCCTTCTGCATCATTTACTCAGTGGTGGGAATACCGTTCACCCTGCTGTTCCTGACGGCGGTGGTCCAGAGGATCATGGAGTTCAGCACTCGCAGGCCCATAGAGTTCCTGCACCGGCGATGGGGCACCTCCAAACCTCTGCTGGCTGCCATGCACGCCACACTACTGGCCATTATAACTGTCTCCTGCTTCTTCCTCATACCTGCCATCATCTTCTCTGTGCTGGAGGAGGAGTGGAACTTCCTGGAGTCCTTCTATTTCTGCTTTATCTCTCTTAGTACCATTGGCTTAGGGGACTATGTGCCAGGAGAGGGTTACCATCAGAGGTTCCGAGAACTTTATAAACTGGGCATTACTTTCTACCTGATATTGGGCTTGATCGCTATGTTGGTGGTTCTGGAAACCTTCTGTGAGCTTCAGCAGCTGAAGAAGCTCAGGAAAATGTTCTACCTGAGGAAACAAAAAACGGAGGACCAGCTAAACATCGTAGATCACGATCACCTCTCTTTTGCCTCTGTGTCCGACCAGGCAGCCTCATTCAGAGAGGATAAGACTGAACTGTTTCCTGATGATATTGTGTCCGGCTCACCTACTGCTACCTCTAATGGATCACTGGAGCGATGAGTCTTCCCTTATATTCATTaacttttcaaaaacatttccatTAAGAGCATAATGTATTGTTAGTGTACTCTGCTGTCAAGTTAACTAAAATCTACTATAGATATGAATACTTGAAA

Function

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0003015 heart process biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0030322 stabilization of membrane potential biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0022841 potassium ion leak channel activity molecular_function
GO:0015271 outward rectifier potassium channel activity molecular_function
GO:0005267 potassium channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070620-26 Enables outward rectifier potassium channel activity. Acts upstream of or within heart process. Predicted to be located in several cellular components, including perikaryon; recycling endosome; and synaptic membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in brain and heart. Orthologous to human KCNK1 (potassium two pore domain channel subfamily K member 1).

Ensembl:

ensembl_id ENSDART00000066259

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009514 lncRNA upstream 43003 30661601 ~ 30662852 (+) True XLOC_004816
TCONS_00010747 lncRNA upstream 54829 30636385 ~ 30651026 (+) True XLOC_004815
TCONS_00010953 lncRNA upstream 72853 30630087 ~ 30633002 (+) False XLOC_004813
TCONS_00009520 lncRNA downstream 14201 30726312 ~ 30726953 (+) False XLOC_004818
TCONS_00009525 lncRNA downstream 221740 30933851 ~ 30952692 (+) True XLOC_004820
TCONS_00010748 lncRNA downstream 563648 31275759 ~ 31276339 (+) True XLOC_004823
TCONS_00010749 lncRNA downstream 856077 31568188 ~ 31568526 (+) True XLOC_004828
TCONS_00010750 lncRNA downstream 871265 31583376 ~ 31603515 (+) True XLOC_004829
TCONS_00009512 mRNA upstream 23928 30653047 ~ 30681927 (+) False XLOC_004816
TCONS_00009513 mRNA upstream 24513 30653942 ~ 30681342 (+) False XLOC_004816
TCONS_00009509 mRNA upstream 87415 30586599 ~ 30618440 (+) False XLOC_004812
TCONS_00009510 mRNA upstream 117566 30586717 ~ 30588289 (+) True XLOC_004812
TCONS_00009508 mRNA upstream 138144 30563550 ~ 30567711 (+) True XLOC_004811
TCONS_00009518 mRNA downstream 11067 30723178 ~ 30738034 (+) False XLOC_004818
TCONS_00009519 mRNA downstream 11667 30723778 ~ 30726912 (+) False XLOC_004818
TCONS_00009522 mRNA downstream 14314 30726425 ~ 30737196 (+) True XLOC_004818
TCONS_00009523 mRNA downstream 76801 30788912 ~ 30808933 (+) False XLOC_004819
TCONS_00009524 mRNA downstream 77500 30789611 ~ 30810171 (+) True XLOC_004819
TCONS_00009507 other upstream 196456 30509283 ~ 30509399 (+) True XLOC_004810
TCONS_00009491 other upstream 494409 30207213 ~ 30211446 (+) False XLOC_004802
TCONS_00009487 other upstream 505086 30168330 ~ 30200769 (+) False XLOC_004802
TCONS_00009482 other upstream 735226 29970513 ~ 29970629 (+) True XLOC_004801
TCONS_00009481 other upstream 745801 29959940 ~ 29960054 (+) True XLOC_004800
TCONS_00009521 other downstream 14313 30726424 ~ 30756585 (+) False XLOC_004818
TCONS_00009526 other downstream 483715 31195826 ~ 31195950 (+) True XLOC_004821
TCONS_00009527 other downstream 496325 31208436 ~ 31208551 (+) True XLOC_004822
TCONS_00009554 other downstream 1204832 31916943 ~ 31917052 (+) True XLOC_004837
TCONS_00009570 other downstream 2239671 32951782 ~ 32951896 (+) True XLOC_004848

Expression Profile

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