RNA id: TCONS_00009538


Basic Information

Item Value
RNA id TCONS_00009538
length 5507
RNA type mRNA
GC content 0.49
exon number 16
gene id XLOC_004831
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 31638045 ~ 31710590 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTTCAGGCATGTGGAAGGCAGCCCTGCGCTTGCTGTCAGCAgagggtggtgtgtgtgtgttgatgttgatGTCAGCATGGAGGCAGTTCAGGATCAGCCTGCTCATGCTGGCGCTTCCATTGGGATGACAGCTGATCCCGCCGTGGCATAGATGAGCATCGGGATCATCTGATCAACTGCAGAGAGCGAGCCTAGTCAATGACAGGCGGCTGAAACGCACGTTCGTCTCATCCGAGGTTTATATTTCACTCAACGATACAAACTTAATGGCAGAAGAGAAAACCCGAACGAGCATCAACTGGAAAGGAAAGTTCCCTTGCTGTCGATTTTTATAGTTTCCTGCAGCGCTGTCTGACCACACTCAGGACATTTGTGATCACACAGGTAATGAGTGAACATGGAGGCTGGCTCGGTGGTGCGTGCAGTGTTTGAGTTCCTCCCGAGCGTCTCTGAAGAGCTTCCTCTGTTCACCGGAGATGTCATTGAAGTGCTCAGTGTTGTTGATGAATTCTGGCTTCTTGGAAACAAAGATGGAGTCACAGGTAAACTCATGAGTGGGTACAAACTgcatttaatttgcttttcatattggtgttgatttttttttcccctgtcCTTTCTTCCCCCAGGCCAGTTTCCTACCACTTTTGTGGAGTCTGTTACAATCCCAGGCACCAAGGCAGGAGAAAATCTGTATGTGTGCATTAATGACTTCAACTCTGCGGAGGCTGGAAACCTACCACTAAAGAGAGGTGATGTAGTTGCTGCTGAAAGTAGTATGGATTCTGTATGGATGAGAGGGCATAATGCATGGGGCTCGCGTGGACTCTTCCCTGTCTCCTGCATTAAAGAGCTAGAGCTTTCTGGACGATCCAGGCAACTATCCGAGCGCAGTGCAGCTGTCCAGGCCTCTGAGCTCCCACCACATGCACTGGGCCAGGCTCGTGCCCTCATGAACCTTCATGCCCAGTTGGACGAGGAGCTGGACTTTCGAGAGGGTGATGTCATCACCATAATAGGCCTGCCAGAACCTGGCTGGTTCCAGGGAGAGCTGGACAACAGGACAGGACTTTTCCCAGAAGGTTTTGTGGAGTTGCTTGGACCTCTGCGCTCACCTCTGGAAGAGCCTGAACCTCAGACCTTGGAACAGTATCCAGATTACAGCAATGAGGATGAAGAGAGGAGAGCGGAAGAAGAGAAGGATGAGGAACCTCCAGAAATGGAGATTCAACAATGTCAagaggatgaagaggaggaggagggagcCATTTACGGTATTGCACTTTATGAATTTCGAGCCCTTGAACCTGGTGAGCTGGACTTTGATGTCGGTGATAGGATCCGCATTCTTGCCTCTATGGATGACGGGTGGTTAGAGGGGCAAATACACAGCAGGAGAGGAGTTTTCCCACATCGATTTGTCAAGATTGAAGGGCAGCTGCAGACTGTCCCACAAACTGAGACTTTAATCAATGAAATTAGTGTACCTAAAAGAGAAGAAGAGTGTTACACCCCAGACTATACCTCAGCTGAGGAAGATCACACAGTTCCAGAATATGGACAGGAGTTGTCTATCCAGCAAGACCACACAGTGTGGGACCTGGATTACTTTGAGCGCCGGGAAGAGGAGCAAAAGGAAAACAATGGTCACAACGTGCACTCTGATCAGAGCTCTCAAGAGAGAAGAATGACTCAAAATCAATCACAGGTTCAGCCCCAAGAACGAAGGCGAGATAGACCCCCACCTCCTCAGACACAACCCAACAGAGGAAGCAGCTCAGCCCACAGAAGTGTTCAAATTAACAGAAGAAGCAGCCCCAATATGGGTCGACCTCAGCTGCCCCCTAGACCAAGTCTACATGCTCTTAGCAACCGAAAATATAGCACTGGTTCTCACGCTAGCTTACGACAACCCCCTCCAGCACCCATCACAATGAACCAGAGTCTCAATCCACCTAACAAAACATCTCCGAATTCCACGTGGACAAGGAACAATGGTAAATATGCCTCTTACAACAGCAGAAACCCCTTAAGCAGTAAAAGTTCTGGTGAGAAGAACAGGCAGAAGAAGCTAACTCGACATGCAAGCGTTAATGATGCAGACATAATATCTGGTGGAAGCAGCGAACAACAGGCATGGCCTCAAGTACAGGGTTCGAATGGGTTTCCGACATCTCAAACTATGGGGACTTTGGCTTTGTCAGCTAAGGATCTTGAAGCCAAGCTTTCTCAGCAGCTGATAGAGTTCGAAAAGAGCTTGCCCAGTCATAGCAATGAAGCAACAGAGCAGAGCCGATGGGAGGAAGTTAGTGGCAGATTAGGCAATAAAGTTTCCCGCCACTTCTCTATTATGGACTACAGTGATGAGAATGACATAATCCGTGGCTCCTCTCACTCCTCGATAGAACGTTTATTACCTTCCACTTCCTCGCCTTCTGGCTCTGCCTCCTCCTCTTTGGAGAGACGAAAAAATCTGCGTCCACCTCCTCCTCGACCTCGAGTCCTTAGGCCTCCGGCACCTACAAATACGCATTGGTCTCAGACCAATGGTCGTATTACTCCTCAGCCTTACCGACCTGCACGTCCAGCACCACGTCCACCTCCTCCATGTCCACACACCAATGCAGTGACACCTCCAACCACATCCAACCCATTTTATAATTCTCCAGATGAAGAGGAGATTGTTGAAGAGATGGAAGAACCAGAGGATGTTCTGGAAGCCGAAAAAGAGATGGAAAGGGAACAGGAGCAATACAGGCTACTCCTGAGGCTGGAGGAGGTGGAAAGAGAAATTGATATGTACTCTAATACAGCCCAGGAACTGCAAGCCATGCTGGATGAGGAGCAGGATGAGACTTCAAGGCAACAAGCTCTGGAGAATCTGGAATTTTGCTCTTACACCATGGAGACACTGACCTTGGAACAGCAGCAACTACAAGAGATGACTCTTCTTGCCTCTCAGCCGAAATCTCTAGAATCATCACCAGCGTCGGCGGCCAACTCTGAAGACCCCGAACTAAGGATGCTGGAGAAAAGGACGAAGGTCATCGAGGAGCTTCTGCAAACTGAACATGACTACATCAAAGACCTTCAGATGTGTGTGAAGGAGATCATTCAGCCTCTGCAGAAGAAACAGGTCCAGGGTATTGACTTTGATGGCCTTTTTGGAAACATCAGCTCTGTTATTGACCTTTCCCGTAGGCTCAACAAGACCCTCCAGGACACTGACTCTATAGGTCAAGTGTTCCTAAGCTACAAAGATCAGTTGGAGGATGTGTACAAGATCTACTGCCAAAATCACGACGACGCCATCTCTTTACTGGAGACCTATGAAAAGGATGAGAACATTCAGAAACATGTGTTGGAGTGTCTAGAGAAGCTCAGAGGGATATATCGCGAGTGGGGAAAGACGAACTACATTAATCTGGGTTCGTTCTTGATAAAGCCGGTGCAGAGAGTGATGCGTTATCCTCTCCTTCTGATGGAGCTGCTGAACACCACTCCTGAATCACACCACGACAGACAGCAGCTCTCTGAGGCAGTCATGTCTATTAAAGAGATCAACGTCAACATCAATGAATACAAGCGGAGGAAGGATCTGGTGGTGAAGTACCGCAAGGGCGATGAAGACAGGCTAATCGACAAGATCTCAAAGCTTAGCATGCACTCCATCATCAAGAAGTCAAACAGAGTGAGCAGCCATTTGAAGCACCTGACTGGGATCTCGCCTCAGATCAAAGATGAAGCTTTTGATGATGCTGAGAAAAGATTCAGACTCCAGGAGAGACTTATTAAATCGTTTATCAGGAACATTTCCCTCTATCTGCAGCATATAAGGGAGTCAGCCTCAGTAAAGGTCTTGGCCGCCATTAGTTTCTGTGACATCTACACAGAACGGCAACAGCAAATGGACCCAGAGCGATTCCAGAGAGCACATCGATGCATCAGCGACAAACAGTTCACAGAGtttAAGGAGAGGACAGAAGCCCTAGTCATCACTCCCTTAACCCAGCTGCTCAACATGTTCACCGGTCCCCACAAACTGATCCAGAAACGTAGAGACAAGCTTCTGGACTACGACAACTGTAAGGAGCGTGCCGAAAGGCTAAAGGACAAGCGTGTGCAGGAGGAGCTGCAGACGGCCAGGAATAACTATGAAGCTCTGAACGCCCAGCTGCTGGACGAGCTGCCCAAGTTCCACCGCGCGGCTGAAGATCTGTTCACCAGCTGCGTCAGGGGTTTCGTCCAAGCCCAGCGAGATTTCATTTCACTCACACTGGGAGAGCTCACACCGCTGCTGCAGCTGTCTGGCTTGGGAGGTACTGAAGGAAATCTGGTGTCCTTGTTCCAAGAGGAGCACACGCGAGTGCTGGATTTACTTCAGAGCTTTAGTTTCTTCCCTGAAAACCTTCCTACTACTGTACGCAAGACTTTCGAGAAGAAGACTCTGGAGAAACAGTACACCAAGAAGCCCCAAGCACCTCCAAACTATGTGCTCCAGACAGATGAGCACCGAGCAGGGCTTCTGGTGAGATATGGCCCAGAGAATCTCTACCAGGCCGAAAGAAATTTTAACGCAGCACAGGACCTAGATGTATCAGTTCTGGAAGGTGACATTGTGGGTGTCATCAAGCAGCAAGACCCCATGGGCAGTCAAAACCGGTGGTTAATAGACAACGGAGttaCGAAGGGATTTGTCTACAGCTCTTTCTTAAAGCCCTACAATCCCCGAAGGAGTCAGTCAGACGTCTCCATTGAGAGCCAGTCATCAAATGAATCCGGCTACGGCGGCTCCTCACCCATGTTTTCACGGCAGAACAGTAACAGCACACTGACTTTCAACCAGGAGACGTCTACTGTCAGCTTCACAACAGCCACGACACAAAACCAATCAAACACTCGGCCAAATAATGAGAGCACTCCGAGGAAAATCAGAGAGACTTCGTCCAATCAGAGGGATTCCCTTGAACCCGGCTTCAGAAACTCACCCAATCACAAAGAAGTGTCAGAAACTGCCATTCGAAACAGCAGGGAATATTCAGAGCCCTCACATCGAAGTTCCACCAATCATAGAGACTCTGTAGACTCTGATCAAAACACTCCAACCAATTCGAGAGATCGGTTAGATTTATCGGAGACAGATTCTTCTTCTTCAAGGAACTCAAGATATGAACCATCATCTAGATATCAGGATTCAAAGGCTTCCTACGGCTCACATCAGCGACAGAATGGAGACTATTCAGGTCAGCAGAGAAGGCCACAATACACTCCTGAGGAGTACATCGAGCCGGAGCCAGAGCCGGAGATTGATGGACACCAGATATACTACGCTCTTTACTCCTTCAGCGCACGCTGTGCAAATGAGCTCAGCATTTCAGCCAATCAGCGGGTGCGAATCCTTGAGTTCCAGGACATGAATGGCAACCAGGAGTGGTGGCTGGGTGAAGCAGGAGGACGGAGGGGGTACGTCCCGTCAAACTACATCCGCAAATCTGAGTACACATGA

Function

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0001822 kidney development biological_process
GO:0030030 cell projection organization biological_process
GO:0060271 cilium assembly biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0005795 Golgi stack cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0045202 synapse cellular_component
GO:0005911 cell-cell junction cellular_component
GO:0030054 cell junction cellular_component
GO:0098793 presynapse cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-101026-2 Predicted to enable guanyl-nucleotide exchange factor activity. Acts upstream of or within cilium assembly and kidney development. Predicted to be located in Golgi apparatus; cell-cell junction; and presynapse. Is expressed in brain; eye; neuromast; pronephric duct; and pronephric tubule. Human ortholog(s) of this gene implicated in cataract 48. Orthologous to human DNMBP (dynamin binding protein).

Ensembl:

ensembl_id ENSDART00000184216

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009536 lncRNA upstream 8438 31625561 ~ 31629607 (+) True XLOC_004830
TCONS_00009535 lncRNA upstream 15544 31616524 ~ 31622501 (+) False XLOC_004830
TCONS_00010956 lncRNA upstream 25134 31609039 ~ 31612911 (+) False XLOC_004830
TCONS_00010955 lncRNA upstream 25311 31608889 ~ 31612734 (+) False XLOC_004830
TCONS_00010750 lncRNA upstream 34530 31583376 ~ 31603515 (+) True XLOC_004829
TCONS_00009551 lncRNA downstream 75189 31783128 ~ 31786395 (+) False XLOC_004835
TCONS_00009552 lncRNA downstream 75190 31783129 ~ 31784148 (+) True XLOC_004835
TCONS_00009553 lncRNA downstream 87092 31795031 ~ 31818605 (+) True XLOC_004836
TCONS_00009559 lncRNA downstream 370129 32078068 ~ 32082143 (+) True XLOC_004839
TCONS_00010957 lncRNA downstream 462529 32170468 ~ 32186567 (+) True XLOC_004841
TCONS_00009534 mRNA upstream 6748 31616412 ~ 31631297 (+) False XLOC_004830
TCONS_00009533 mRNA upstream 6913 31608908 ~ 31631132 (+) False XLOC_004830
TCONS_00009532 mRNA upstream 25058 31608905 ~ 31612987 (+) False XLOC_004830
TCONS_00009531 mRNA upstream 82041 31537604 ~ 31556004 (+) True XLOC_004827
TCONS_00009530 mRNA upstream 103955 31494830 ~ 31534090 (+) True XLOC_004826
TCONS_00009541 mRNA downstream 5300 31713239 ~ 31720066 (+) True XLOC_004832
TCONS_00009542 mRNA downstream 21136 31729075 ~ 31765822 (+) False XLOC_004833
TCONS_00009544 mRNA downstream 21559 31729498 ~ 31754152 (+) False XLOC_004833
TCONS_00009543 mRNA downstream 21559 31729498 ~ 31754152 (+) False XLOC_004833
TCONS_00009545 mRNA downstream 21559 31729498 ~ 31756495 (+) False XLOC_004833
TCONS_00009527 other upstream 429494 31208436 ~ 31208551 (+) True XLOC_004822
TCONS_00009526 other upstream 442095 31195826 ~ 31195950 (+) True XLOC_004821
TCONS_00009521 other upstream 881460 30726424 ~ 30756585 (+) False XLOC_004818
TCONS_00009507 other upstream 1128646 30509283 ~ 30509399 (+) True XLOC_004810
TCONS_00009491 other upstream 1426599 30207213 ~ 30211446 (+) False XLOC_004802
TCONS_00009554 other downstream 209004 31916943 ~ 31917052 (+) True XLOC_004837
TCONS_00009570 other downstream 1243843 32951782 ~ 32951896 (+) True XLOC_004848
TCONS_00009582 other downstream 1752883 33460822 ~ 33467729 (+) False XLOC_004852
TCONS_00009593 other downstream 2267203 33975142 ~ 33980080 (+) True XLOC_004859
TCONS_00009609 other downstream 3173838 34881777 ~ 34881895 (+) True XLOC_004869

Expression Profile

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