RNA id: TCONS_00009543


Basic Information

Item Value
RNA id TCONS_00009543
length 1743
RNA type mRNA
GC content 0.51
exon number 16
gene id XLOC_004833
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 31729075 ~ 31765822 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGGAGCTTTGACAAGCCGTCAGAATGCAGGAGTGGAGGAGGTCGATATACCGTCTAATTCTGTTTACAGATACCCACCCAAATCTGGAAGTTATTTCGCTAGCCATTTTATAATGGGAGGAGAGAAGTTTGATTCGACTCATCCTGAAGGCTACCTCTTTGGTGAAAACACAGACCTCAACTTCCTAGGCAACAGACCAGTAGTGTTTCCATACAATGCTCCTCCTCCTCATGAGCCAGTCAAGACTCTCCGCAGTCTCATCAACATACGGAAAGACACTCTGCGGCTTGTCCGATGTAGTGAAGACATGAAGTTGCCTGGACAGGAAGTTGGGAAAAGCCACAGCTGCTACAACATTGAGTTTACCTTTGATGCCGACACACAAGTTGCCATCACTATATACTACCAAGCCATTGAAGAGTTTCACAATGGTGTATATTTGCCGCAGGACAGCTCTCTGCAGTCAGAGACGGTGCATTTCAAACGCGGCGTCTGCCAACAGTTCTGTCTGCCCTCTCATTATGTCAACTTATCAGAGTGGGCAGAGGACGAGctacttTTTGACATGGATAAGGACATCTATCCGATGGTTGTACAAGCAGTAGTGGATGAGGGAGATGAACACTTGGGACACTCACATGTTCTTCTTGCAACCTTTGAGaagTGGCAAATGTTCAATAAACCTCTTAAGCTCAGTGTGGATGGAGTCAGTTACCTGCTGCAAGAGATCTACGGCATAGAGAATAAATACAACAGTCAAGAATCAAAGGTTGCTGAAGATGAGATTAGTGACAACAGCGCTGAATGTGTGGTGTGTTTGTCGGACGTGCGGGACACACTGATCCTGCCCTGCAGACACCTGTGCCTGTGCAACGCCTGTGCAGACACGCTGCGCTACCAGGCCAACTGTTGCCCCATCTGTCGACTGCCATTTCGTGCCCTTCTTCAAATCCGAGCGATGAGGAAAAAACTGAGCCCACTTACACCTACTGGATTTAACCCTGTCATCACCTCACAGACGTCAGATTCAGAGGAGCACTCGGCGTCAGAGCACATCCCACCAGGCTACGAAGCTGTGTCCCTGTTGGAGGCCTTGAATGGGCCCCTGAACCCGTCGCCATCTGCTCCTCCACTTCAGGGCCTCACCAGGGGCCATGTTTCTGGATCCGTGCCCACATTTGGCAGTGAGAGCCACCACACGCCCGTGCGCTCCCTCTCTCCACTAGATCATTCTGTCAACCCCAACCAGACTGTGAAACACAAGAAAAGTGGCTCAAAATCACTCTCCCAGAATTCATCAGTTCTGCCTGAGGAGGAGGATGAGAAGTCATGCAGCGAATCTGAAGCGCAAACATGCAGGAGAAAACTACATGTAGAACAACAAGAGTCTGGAGTGACTCCTGAAAGCGACAACCTCACCTTGTCATCCTCGGGGGCCATCGATCAGTCCTGTAACGGGACGCCTCTCTCCTCCACGATCACCTCCCCAGAGGATCCAGTCAGCAGCAGCCTGGCTCAGTCAGTGATGTCCATGGCGTCGTCTCATAGTCACACAGACACTCTGTCCTCAATGTCTGGATCCTACATGGCTGGAGCCGAGGGGGAGGAGGCTGCTGAGACCCCAGCCGAGAGCAGAGCACCTTCACAACATGAGGGTGAGGTAAGAGAGTTAAAAGGCCTGGAAGCAGCACGTCATCGACTTCCGATGCTGTTGCTGAAGTTGATGGTTTTTTCAACATGA

Function

GO: NA

KEGG:

id description
ko04121 Ubiquitin system

Ensembl:

ensembl_id ENSDART00000182562

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009536 lncRNA upstream 99891 31625561 ~ 31629607 (+) True XLOC_004830
TCONS_00009535 lncRNA upstream 106997 31616524 ~ 31622501 (+) False XLOC_004830
TCONS_00010956 lncRNA upstream 116587 31609039 ~ 31612911 (+) False XLOC_004830
TCONS_00010955 lncRNA upstream 116764 31608889 ~ 31612734 (+) False XLOC_004830
TCONS_00010750 lncRNA upstream 125983 31583376 ~ 31603515 (+) True XLOC_004829
TCONS_00009551 lncRNA downstream 28976 31783128 ~ 31786395 (+) False XLOC_004835
TCONS_00009552 lncRNA downstream 28977 31783129 ~ 31784148 (+) True XLOC_004835
TCONS_00009553 lncRNA downstream 40879 31795031 ~ 31818605 (+) True XLOC_004836
TCONS_00009559 lncRNA downstream 323916 32078068 ~ 32082143 (+) True XLOC_004839
TCONS_00010957 lncRNA downstream 416316 32170468 ~ 32186567 (+) True XLOC_004841
TCONS_00009541 mRNA upstream 9432 31713239 ~ 31720066 (+) True XLOC_004832
TCONS_00009539 mRNA upstream 18908 31638045 ~ 31710590 (+) False XLOC_004831
TCONS_00009538 mRNA upstream 21559 31638045 ~ 31707939 (+) False XLOC_004831
TCONS_00009548 mRNA downstream 19283 31773435 ~ 31779178 (+) True XLOC_004834
TCONS_00009549 mRNA downstream 21030 31775182 ~ 31812186 (+) False XLOC_004835
TCONS_00009550 mRNA downstream 28914 31783066 ~ 31787861 (+) False XLOC_004835
TCONS_00009555 mRNA downstream 265969 32020121 ~ 32069756 (+) True XLOC_004838
TCONS_00009556 mRNA downstream 319508 32073660 ~ 32145981 (+) False XLOC_004839
TCONS_00009527 other upstream 520947 31208436 ~ 31208551 (+) True XLOC_004822
TCONS_00009526 other upstream 533548 31195826 ~ 31195950 (+) True XLOC_004821
TCONS_00009521 other upstream 972913 30726424 ~ 30756585 (+) False XLOC_004818
TCONS_00009507 other upstream 1220099 30509283 ~ 30509399 (+) True XLOC_004810
TCONS_00009491 other upstream 1518052 30207213 ~ 30211446 (+) False XLOC_004802
TCONS_00009554 other downstream 162791 31916943 ~ 31917052 (+) True XLOC_004837
TCONS_00009570 other downstream 1197630 32951782 ~ 32951896 (+) True XLOC_004848
TCONS_00009582 other downstream 1706670 33460822 ~ 33467729 (+) False XLOC_004852
TCONS_00009593 other downstream 2220990 33975142 ~ 33980080 (+) True XLOC_004859
TCONS_00009609 other downstream 3127625 34881777 ~ 34881895 (+) True XLOC_004869

Expression Profile

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