Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00009551 |
| length | 800 |
| lncRNA type | retained_intron |
| GC content | 0.41 |
| exon number | 6 |
| gene id | XLOC_004835 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 31775182 ~ 31812186 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0046579 | positive regulation of Ras protein signal transduction | biological_process |
| GO:0007165 | signal transduction | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005789 | endoplasmic reticulum membrane | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0005635 | nuclear envelope | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-040426-2547 | Predicted to be involved in positive regulation of Ras protein signal transduction and signal transduction. Predicted to be located in endoplasmic reticulum membrane and nuclear envelope. Predicted to be integral component of membrane. Is expressed in several structures, including axis; hatching gland; notochord; otic vesicle; and polster. Orthologous to human LRRC59 (leucine rich repeat containing 59). |
| ensembl_id | ENSDART00000137965 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00009536 | lncRNA | upstream | 153521 | 31625561 ~ 31629607 (+) | True | XLOC_004830 |
| TCONS_00009535 | lncRNA | upstream | 160627 | 31616524 ~ 31622501 (+) | False | XLOC_004830 |
| TCONS_00010956 | lncRNA | upstream | 170217 | 31609039 ~ 31612911 (+) | False | XLOC_004830 |
| TCONS_00010955 | lncRNA | upstream | 170394 | 31608889 ~ 31612734 (+) | False | XLOC_004830 |
| TCONS_00010750 | lncRNA | upstream | 179613 | 31583376 ~ 31603515 (+) | True | XLOC_004829 |
| TCONS_00009553 | lncRNA | downstream | 8636 | 31795031 ~ 31818605 (+) | True | XLOC_004836 |
| TCONS_00009559 | lncRNA | downstream | 291673 | 32078068 ~ 32082143 (+) | True | XLOC_004839 |
| TCONS_00010957 | lncRNA | downstream | 384073 | 32170468 ~ 32186567 (+) | True | XLOC_004841 |
| TCONS_00009566 | lncRNA | downstream | 615689 | 32402084 ~ 32416844 (+) | True | XLOC_004845 |
| TCONS_00009567 | lncRNA | downstream | 645219 | 32431614 ~ 32495365 (+) | False | XLOC_004846 |
| TCONS_00009548 | mRNA | upstream | 3950 | 31773435 ~ 31779178 (+) | True | XLOC_004834 |
| TCONS_00009542 | mRNA | upstream | 17306 | 31729075 ~ 31765822 (+) | False | XLOC_004833 |
| TCONS_00009547 | mRNA | upstream | 23445 | 31744217 ~ 31759683 (+) | True | XLOC_004833 |
| TCONS_00009545 | mRNA | upstream | 26633 | 31729498 ~ 31756495 (+) | False | XLOC_004833 |
| TCONS_00009544 | mRNA | upstream | 28976 | 31729498 ~ 31754152 (+) | False | XLOC_004833 |
| TCONS_00009555 | mRNA | downstream | 233726 | 32020121 ~ 32069756 (+) | True | XLOC_004838 |
| TCONS_00009556 | mRNA | downstream | 287265 | 32073660 ~ 32145981 (+) | False | XLOC_004839 |
| TCONS_00009557 | mRNA | downstream | 287275 | 32073670 ~ 32085605 (+) | False | XLOC_004839 |
| TCONS_00009558 | mRNA | downstream | 291661 | 32078056 ~ 32090336 (+) | False | XLOC_004839 |
| TCONS_00009560 | mRNA | downstream | 372877 | 32159272 ~ 32165227 (+) | True | XLOC_004840 |
| TCONS_00009527 | other | upstream | 574577 | 31208436 ~ 31208551 (+) | True | XLOC_004822 |
| TCONS_00009526 | other | upstream | 587178 | 31195826 ~ 31195950 (+) | True | XLOC_004821 |
| TCONS_00009521 | other | upstream | 1026543 | 30726424 ~ 30756585 (+) | False | XLOC_004818 |
| TCONS_00009507 | other | upstream | 1273729 | 30509283 ~ 30509399 (+) | True | XLOC_004810 |
| TCONS_00009491 | other | upstream | 1571682 | 30207213 ~ 30211446 (+) | False | XLOC_004802 |
| TCONS_00009554 | other | downstream | 130548 | 31916943 ~ 31917052 (+) | True | XLOC_004837 |
| TCONS_00009570 | other | downstream | 1165387 | 32951782 ~ 32951896 (+) | True | XLOC_004848 |
| TCONS_00009582 | other | downstream | 1674427 | 33460822 ~ 33467729 (+) | False | XLOC_004852 |
| TCONS_00009593 | other | downstream | 2188747 | 33975142 ~ 33980080 (+) | True | XLOC_004859 |
| TCONS_00009609 | other | downstream | 3095382 | 34881777 ~ 34881895 (+) | True | XLOC_004869 |
