RNA id: TCONS_00009552


Basic Information

Item Value
RNA id TCONS_00009552
length 835
lncRNA type retained_intron
GC content 0.32
exon number 2
gene id XLOC_004835
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 31775182 ~ 31812186 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGCGATGCGAAATCTGTGAACTCACTGTATTCAGTTACACGTACAGCTCTGCAGTGGGTCTCAACTGTTTCATACCATCTGTAACAAGTGAGGAACAGCTTATCAACATGAATAAAGGCAAAATTGAAAACATTAAAGACAAAATTGATGGCAACGAGCTGGATTTGAGTCTCAGCAATTTAACAGAAGTGCCAGTCAAGGAGTTggtgagtgtttgtttgtgtgtgtgtccacagtTTTTGTTCACTTTATCGTTAtcaggattgttttttttattttgcttacacATGTTTAAAGAAAGTTCTTAGTTTTCTCAATGAGGCAAGACTCGCAGTTATCACCATAATGGTCCAGTTGACTGATTACATTAGGAATAGCAAAAAACTGATGTATTACAAATTTGATAACATGTTATATTCAAATATGTGAAcatttgatgagtttttttattacttattattttgaTACACATTGGAGTCTGTTGAATTTTTACTCAGAGAACTTGTGAAtctgattgaggtaaagttggttttatattcacacattcggacgttctccttaataatataatttcagaaaagtatactttgcaaattctaaataatgaaatcatatgagcagccaatgactatcagagTACAACAATGTTCACAGTCATATAAATTGtactgatgttgttttgaagtcatacttgcatgtttttttcagactgaatatttaaagtaccatggGAAACAATATTGGGATCATGTCACAAGTTATCACtgaacaaatttatatatatataatttttttttaacagaataaaatgtgtatatgtatatacgcGGGCATA

Function

GO:

id name namespace
GO:0046579 positive regulation of Ras protein signal transduction biological_process
GO:0007165 signal transduction biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005635 nuclear envelope cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2547 Predicted to be involved in positive regulation of Ras protein signal transduction and signal transduction. Predicted to be located in endoplasmic reticulum membrane and nuclear envelope. Predicted to be integral component of membrane. Is expressed in several structures, including axis; hatching gland; notochord; otic vesicle; and polster. Orthologous to human LRRC59 (leucine rich repeat containing 59).

Ensembl:

ensembl_id ENSDART00000134006

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009536 lncRNA upstream 153522 31625561 ~ 31629607 (+) True XLOC_004830
TCONS_00009535 lncRNA upstream 160628 31616524 ~ 31622501 (+) False XLOC_004830
TCONS_00010956 lncRNA upstream 170218 31609039 ~ 31612911 (+) False XLOC_004830
TCONS_00010955 lncRNA upstream 170395 31608889 ~ 31612734 (+) False XLOC_004830
TCONS_00010750 lncRNA upstream 179614 31583376 ~ 31603515 (+) True XLOC_004829
TCONS_00009553 lncRNA downstream 10883 31795031 ~ 31818605 (+) True XLOC_004836
TCONS_00009559 lncRNA downstream 293920 32078068 ~ 32082143 (+) True XLOC_004839
TCONS_00010957 lncRNA downstream 386320 32170468 ~ 32186567 (+) True XLOC_004841
TCONS_00009566 lncRNA downstream 617936 32402084 ~ 32416844 (+) True XLOC_004845
TCONS_00009567 lncRNA downstream 647466 32431614 ~ 32495365 (+) False XLOC_004846
TCONS_00009548 mRNA upstream 3951 31773435 ~ 31779178 (+) True XLOC_004834
TCONS_00009547 mRNA upstream 23446 31744217 ~ 31759683 (+) True XLOC_004833
TCONS_00009545 mRNA upstream 26634 31729498 ~ 31756495 (+) False XLOC_004833
TCONS_00009543 mRNA upstream 28977 31729498 ~ 31754152 (+) False XLOC_004833
TCONS_00009555 mRNA downstream 235973 32020121 ~ 32069756 (+) True XLOC_004838
TCONS_00009556 mRNA downstream 289512 32073660 ~ 32145981 (+) False XLOC_004839
TCONS_00009557 mRNA downstream 289522 32073670 ~ 32085605 (+) False XLOC_004839
TCONS_00009558 mRNA downstream 293908 32078056 ~ 32090336 (+) False XLOC_004839
TCONS_00009560 mRNA downstream 375124 32159272 ~ 32165227 (+) True XLOC_004840
TCONS_00009527 other upstream 574578 31208436 ~ 31208551 (+) True XLOC_004822
TCONS_00009526 other upstream 587179 31195826 ~ 31195950 (+) True XLOC_004821
TCONS_00009521 other upstream 1026544 30726424 ~ 30756585 (+) False XLOC_004818
TCONS_00009507 other upstream 1273730 30509283 ~ 30509399 (+) True XLOC_004810
TCONS_00009491 other upstream 1571683 30207213 ~ 30211446 (+) False XLOC_004802
TCONS_00009554 other downstream 132795 31916943 ~ 31917052 (+) True XLOC_004837
TCONS_00009570 other downstream 1167634 32951782 ~ 32951896 (+) True XLOC_004848
TCONS_00009582 other downstream 1676674 33460822 ~ 33467729 (+) False XLOC_004852
TCONS_00009593 other downstream 2190994 33975142 ~ 33980080 (+) True XLOC_004859
TCONS_00009609 other downstream 3097629 34881777 ~ 34881895 (+) True XLOC_004869

Expression Profile

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