RNA id: TCONS_00009564


Basic Information

Item Value
RNA id TCONS_00009564
length 1424
RNA type mRNA
GC content 0.49
exon number 2
gene id XLOC_004843
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 32292564 ~ 32374156 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCAAGGATGGAAAATATGAAAGCGGTAGTCGTGAAGATTCACTGCACGGAGGTTAACGGCTCTGATTGAAAACACATTTTACCTCTCATTTCGCTTCTGCACACTAAATAGGAGCAATATGTACAATTCGGGGCTCTGACGTGCTGTGATTGGTGAACAGAGGAAGATgacacaaaataaattatgatattaGTCACGGTCATGCCCCTTCAGACTTCACAGCAAGTTTTCCGTGGCCTCCTTTTGAAGCTTTTGTGCGACGCGCTTTAATGGCTTGAAAAGCTTTGTGATGTTTGTGGGGAAAATACCGCATTTCTCACACTGAAAGCTGCCATTTGCATTTATATCCACTCAACATTTAAATAGCACCGATGAACCTTATTTTCAGCATCGTCAATGAAATAACAGcactctttgttgttgtttttttgtgtttttaaagcaATTGGACGAGATGTGGCGAGAAGTCCGCTGGATCACCAATGCGCTGCAGTACGCCCGCTATAAACAGCCTCTCGGTTGGGTGCCGATCACCTGGCTAGTAGATGTCAGCGTGGAGCCTCCTGTCCAGAAGAATGACTCCACGTCGTCTAACACGGACTACGTGCCCACTCCCTCACCCTCTCCAGAAATGAGAAGAAGAAAGCCCACTATTGAGTCCCAGCCAGGCTCAGATGAAGAAGGCTGCTCAGAAGTTTTCCTTCCCACTGACAGTGACTATGACTCCAGTGATGCCCTGAGCCCTCGAGACCTAGACTTAGTTTATTCCTCAGCCCAGGATCTCTCCCATCAGGCCGTGCATGTCCTCAGTGGCAGCGCTCCCGATGTCCTCCAAATGCACGATCTTAAATACAGCGTCTGCTCCAAGTCGATCCTGGAGACTGAATCCTGCACAAAAGATTTGGAGGATCTATCGCTCTCCTCTTACTCCGTGAAGACCACCGACAAACCGTCCCGCTCCAAGTTTCTTGCCGATGCCCCAACAAAACGCAAGCTGCTGTCCAAAAGCCATCCTCAGAGGAGTTATTTCGGCGGACCACACCGCTGGCTTCGTGTACAAAGCGAAAGCCACACTCCGTCGCTTTCCGAAGGTATTTACACTAGACAGAGTGATATCGACCTCCCGCTGGAGACACCACTTTCAATACCGCACTCGCCCACTACCTCCTACAGTCTGGATGAGTACAGGCAGCCCTACAGAGAATCCAAACCCAACGTTCGCAGAATATTTGTAGAGTCATGCAGCAAGACTTCACCCTGTAGAGATGCACCGCATtgggaggaagaggaggagaaagGCTCACGAGGAGCAACGGcgtcgggggctcgtccgggatacagCTCAACATCGGAAGCTCAGGATGTGGATTCAGATGAGCAAACTAATGAACAAGTGTCGGAGATCCTCAGCAGCACTCTTTAG

Function

GO: NA

KEGG:

id description
ko04990 Domain-containing proteins not elsewhere classified

Ensembl:

ensembl_id ENSDART00000086389

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010957 lncRNA upstream 182007 32170468 ~ 32186567 (+) True XLOC_004841
TCONS_00009559 lncRNA upstream 286431 32078068 ~ 32082143 (+) True XLOC_004839
TCONS_00009553 lncRNA upstream 549969 31795031 ~ 31818605 (+) True XLOC_004836
TCONS_00009551 lncRNA upstream 582179 31783128 ~ 31786395 (+) False XLOC_004835
TCONS_00009566 lncRNA downstream 27928 32402084 ~ 32416844 (+) True XLOC_004845
TCONS_00009567 lncRNA downstream 57458 32431614 ~ 32495365 (+) False XLOC_004846
TCONS_00010958 lncRNA downstream 57486 32431642 ~ 32501829 (+) False XLOC_004846
TCONS_00010960 lncRNA downstream 57502 32431658 ~ 32526346 (+) False XLOC_004846
TCONS_00010959 lncRNA downstream 57502 32431658 ~ 32526346 (+) False XLOC_004846
TCONS_00009563 mRNA upstream 7329 32323098 ~ 32361245 (+) False XLOC_004843
TCONS_00009561 mRNA upstream 103405 32199651 ~ 32265169 (+) True XLOC_004842
TCONS_00009560 mRNA upstream 203347 32159272 ~ 32165227 (+) True XLOC_004840
TCONS_00009556 mRNA upstream 222593 32073660 ~ 32145981 (+) False XLOC_004839
TCONS_00009565 mRNA downstream 14704 32388860 ~ 32390444 (+) True XLOC_004844
TCONS_00009569 mRNA downstream 355314 32729470 ~ 33245236 (+) False XLOC_004847
TCONS_00009571 mRNA downstream 664601 33038757 ~ 33245236 (+) False XLOC_004847
TCONS_00009572 mRNA downstream 777090 33151246 ~ 33251465 (+) True XLOC_004847
TCONS_00009573 mRNA downstream 946348 33320504 ~ 33336787 (+) False XLOC_004849
TCONS_00009554 other upstream 451522 31916943 ~ 31917052 (+) True XLOC_004837
TCONS_00009527 other upstream 1160023 31208436 ~ 31208551 (+) True XLOC_004822
TCONS_00009526 other upstream 1172624 31195826 ~ 31195950 (+) True XLOC_004821
TCONS_00009521 other upstream 1611989 30726424 ~ 30756585 (+) False XLOC_004818
TCONS_00009507 other upstream 1859175 30509283 ~ 30509399 (+) True XLOC_004810
TCONS_00009570 other downstream 577626 32951782 ~ 32951896 (+) True XLOC_004848
TCONS_00009582 other downstream 1086666 33460822 ~ 33467729 (+) False XLOC_004852
TCONS_00009593 other downstream 1600986 33975142 ~ 33980080 (+) True XLOC_004859
TCONS_00009609 other downstream 2507621 34881777 ~ 34881895 (+) True XLOC_004869
TCONS_00009621 other downstream 2732419 35106575 ~ 35107998 (+) True XLOC_004876

Expression Profile

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