RNA id: TCONS_00010751


Basic Information

Item Value
RNA id TCONS_00010751
length 335
lncRNA type sense_over
GC content 0.52
exon number 2
gene id XLOC_004847
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 32729470 ~ 33251465 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cAGGAATCAGACACTTCTGTGGTTGCAGTAAGACCCCAACAAGCTCAGCCACAGCTGTACATGGAGACCCCCAGCTGGGCAGAAACCAAACCAGGAAACGGGCTGTGTAAAACAGGAAGCATTGCTCTCTTTGGAAACGTAGTGTACAGCGGGCTGCTGAACGATCACTTTTGGCATTTCGGGGTTCCCCTTGTCACAAGACTGGTGAGTGAATGCCCACTTTGTGTTCTCCAGATTGGTGGCATTGTTGGCACATGCCTCTCTGCTCCCTTTGCCACCTTAGGATTTCCCACTGGCAGCTGGGATTTGGCATCCGTTGTGTTTTGGCTGGGAAG

Function

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006397 mRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0007399 nervous system development biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010960 lncRNA upstream 355559 32431658 ~ 32526346 (+) False XLOC_004846
TCONS_00010959 lncRNA upstream 355559 32431658 ~ 32526346 (+) False XLOC_004846
TCONS_00010958 lncRNA upstream 380076 32431642 ~ 32501829 (+) False XLOC_004846
TCONS_00009567 lncRNA upstream 386540 32431614 ~ 32495365 (+) False XLOC_004846
TCONS_00010963 lncRNA upstream 386540 32431688 ~ 32495365 (+) False XLOC_004846
TCONS_00010966 lncRNA downstream 363924 33340215 ~ 33341296 (+) False XLOC_004850
TCONS_00010752 lncRNA downstream 364164 33340455 ~ 33343285 (+) False XLOC_004850
TCONS_00010967 lncRNA downstream 365087 33341378 ~ 33343226 (+) True XLOC_004850
TCONS_00009580 lncRNA downstream 462561 33438852 ~ 33439421 (+) True XLOC_004851
TCONS_00009585 lncRNA downstream 508392 33484683 ~ 33507829 (+) True XLOC_004853
TCONS_00009565 mRNA upstream 491461 32388860 ~ 32390444 (+) True XLOC_004844
TCONS_00009562 mRNA upstream 507749 32292564 ~ 32374156 (+) False XLOC_004843
TCONS_00009564 mRNA upstream 507749 32368574 ~ 32374156 (+) True XLOC_004843
TCONS_00009563 mRNA upstream 520660 32323098 ~ 32361245 (+) False XLOC_004843
TCONS_00009561 mRNA upstream 616736 32199651 ~ 32265169 (+) True XLOC_004842
TCONS_00009571 mRNA downstream 62466 33038757 ~ 33245236 (+) False XLOC_004847
TCONS_00009572 mRNA downstream 174955 33151246 ~ 33251465 (+) True XLOC_004847
TCONS_00009573 mRNA downstream 344213 33320504 ~ 33336787 (+) False XLOC_004849
TCONS_00009574 mRNA downstream 344593 33320884 ~ 33332997 (+) True XLOC_004849
TCONS_00009575 mRNA downstream 385657 33361948 ~ 33396299 (+) False XLOC_004851
TCONS_00009554 other upstream 964853 31916943 ~ 31917052 (+) True XLOC_004837
TCONS_00009527 other upstream 1673354 31208436 ~ 31208551 (+) True XLOC_004822
TCONS_00009526 other upstream 1685955 31195826 ~ 31195950 (+) True XLOC_004821
TCONS_00009521 other upstream 2125320 30726424 ~ 30756585 (+) False XLOC_004818
TCONS_00009507 other upstream 2372506 30509283 ~ 30509399 (+) True XLOC_004810
TCONS_00009582 other downstream 484531 33460822 ~ 33467729 (+) False XLOC_004852
TCONS_00009593 other downstream 998851 33975142 ~ 33980080 (+) True XLOC_004859
TCONS_00009609 other downstream 1905486 34881777 ~ 34881895 (+) True XLOC_004869
TCONS_00009621 other downstream 2130284 35106575 ~ 35107998 (+) True XLOC_004876
TCONS_00009628 other downstream 2635407 35611698 ~ 35611814 (+) True XLOC_004881

Expression Profile

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