RNA id: TCONS_00009571


Basic Information

Item Value
RNA id TCONS_00009571
length 1104
RNA type mRNA
GC content 0.56
exon number 12
gene id XLOC_004847
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 32729470 ~ 33251465 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCGCAAAACGTCCCGCTACCACATGCTGTGCTCAATGGCCAACACAGGCTGTCTTCTGCTCTCCGGCTCAGGGATGCTAACTCACTCTCTCCAGTGTCCCCCTGCGTTCCTCTACCTACCCGAGGGTAACCAGGAGGCCCCAGCTCCCCCAGAAGCCATGGCTCAGCCGTACGCCCCAGCTCagtatcctcctcctccacctcaaaACGGGCTGCCTGGCGAATACACCCACCCTGGGCAGGACTACACAGGGCCCAGTCCGGTCCCTGAGCATGCGGCGGCCCTCACCATCTACACaccaacacagacacacagcgaGCCGCCTGGCACCGACAGCAGCACACCATCCCTCACAGGGACCAGCAGCTTAACACAGGCGGACGATGTGGTACAGACAGACGGATCTCAGCAGCTTCAGCTCCAGCCATCAGACTCTTCGGAGAAGCAGCAGCCCAAACGGTTACACGTCTCCAACATTCCCTTCCGCTTCCGAGACCCAGACCTCCGGCAAATGTTCGGGCAATTTGGGAAAATTTTGGATGTGGAAATTATTTTTAACGAGCGAGGCTCTAAGGGTTTTGGTTTTGTAACTTTTGAAACAAGTGCAGATGCAGACCGTGCACGGGAGAAATTAAACGGTACAATCGTAGAGGGACGCAAAATTGAGGTAAATAATGCAACGGCACGAGTAATGACAAACAAAAAAGTGGCCAACCCCTATACAAATGGCTGGAAGCTGAATCCAGTGGTGGGAGCTGTCTATGGTCCTGAATTTTATGCAGTGACAGGCTTCCCCTATCCAACCACAGGGGCGACGGTGGCTTACAGGGGCGCCCACTTGAGAGGCAGAGGTCGTGCCGTCTACAATACGTTCCGTGCTGCGCCTCCACCCCCTCCCATTCCCGCCTACGGAGCTGTGGTTTACCAAGATGGCTTCTACGGTGCTGAGATCTATGGTGGCTATGCAGCATACAGATATGCCCAACCAGCCGCAGCAGCCGCAGCCGCCTACAGTGACAGCTATGGCAGAGTCTATGCAACAGCAGACCCTTATCACCACACGATTGGACCTGCAGCCACGTACAGCGTGGGCACTATGTAA

Function

GO:

id name namespace
GO:0000381 regulation of alternative mRNA splicing, via spliceosome biological_process
GO:0006397 mRNA processing biological_process
GO:0043484 regulation of RNA splicing biological_process
GO:0007399 nervous system development biological_process
GO:0008380 RNA splicing biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-111213-1 Predicted to enable mRNA binding activity. Predicted to be involved in nervous system development and regulation of alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within RNA splicing; mRNA processing; and regulation of RNA splicing. Located in nucleus. Is expressed in brain; heart; and spinal cord. Orthologous to human RBFOX3 (RNA binding fox-1 homolog 3).

Ensembl:

ensembl_id ENSDART00000153146

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010751 lncRNA upstream 62466 32881905 ~ 32976291 (+) False XLOC_004847
TCONS_00010960 lncRNA upstream 512411 32431658 ~ 32526346 (+) False XLOC_004846
TCONS_00010959 lncRNA upstream 512411 32431658 ~ 32526346 (+) False XLOC_004846
TCONS_00010958 lncRNA upstream 536928 32431642 ~ 32501829 (+) False XLOC_004846
TCONS_00009567 lncRNA upstream 543392 32431614 ~ 32495365 (+) False XLOC_004846
TCONS_00010966 lncRNA downstream 94979 33340215 ~ 33341296 (+) False XLOC_004850
TCONS_00010752 lncRNA downstream 95219 33340455 ~ 33343285 (+) False XLOC_004850
TCONS_00010967 lncRNA downstream 96142 33341378 ~ 33343226 (+) True XLOC_004850
TCONS_00009580 lncRNA downstream 193616 33438852 ~ 33439421 (+) True XLOC_004851
TCONS_00009585 lncRNA downstream 239447 33484683 ~ 33507829 (+) True XLOC_004853
TCONS_00009565 mRNA upstream 648313 32388860 ~ 32390444 (+) True XLOC_004844
TCONS_00009562 mRNA upstream 664601 32292564 ~ 32374156 (+) False XLOC_004843
TCONS_00009564 mRNA upstream 664601 32368574 ~ 32374156 (+) True XLOC_004843
TCONS_00009563 mRNA upstream 677512 32323098 ~ 32361245 (+) False XLOC_004843
TCONS_00009561 mRNA upstream 773588 32199651 ~ 32265169 (+) True XLOC_004842
TCONS_00009573 mRNA downstream 75268 33320504 ~ 33336787 (+) False XLOC_004849
TCONS_00009574 mRNA downstream 75648 33320884 ~ 33332997 (+) True XLOC_004849
TCONS_00009575 mRNA downstream 116712 33361948 ~ 33396299 (+) False XLOC_004851
TCONS_00009576 mRNA downstream 150512 33395748 ~ 33450512 (+) False XLOC_004851
TCONS_00009577 mRNA downstream 151253 33396489 ~ 33404086 (+) False XLOC_004851
TCONS_00009570 other upstream 86861 32951782 ~ 32951896 (+) True XLOC_004848
TCONS_00009554 other upstream 1121705 31916943 ~ 31917052 (+) True XLOC_004837
TCONS_00009527 other upstream 1830206 31208436 ~ 31208551 (+) True XLOC_004822
TCONS_00009526 other upstream 1842807 31195826 ~ 31195950 (+) True XLOC_004821
TCONS_00009521 other upstream 2282172 30726424 ~ 30756585 (+) False XLOC_004818
TCONS_00009582 other downstream 215586 33460822 ~ 33467729 (+) False XLOC_004852
TCONS_00009593 other downstream 729906 33975142 ~ 33980080 (+) True XLOC_004859
TCONS_00009609 other downstream 1636541 34881777 ~ 34881895 (+) True XLOC_004869
TCONS_00009621 other downstream 1861339 35106575 ~ 35107998 (+) True XLOC_004876
TCONS_00009628 other downstream 2366462 35611698 ~ 35611814 (+) True XLOC_004881

Expression Profile

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