RNA id: TCONS_00010966


Basic Information

Item Value
RNA id TCONS_00010966
length 962
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_004850
representative False

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 33340215 ~ 33343285 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tcaagactttcagaaaaaggaaaaaatagtgACAGATAATTGGCAGCCAGAAGAAAACATCAAATTTACCAAAAACAGCttaggagctacgttttttttgcagtttttgtttttgtgaatccaccagaggctgctgtgtacgctttttgagatctcaaatttctcttgcgagtgccattcgtgcctgctgttctctcgtaaatccaccagaggctgctgtcgactgaacgatagactgacccaccctcctccttgcctaaactcaaccaatagtgttttcaaaagcaccaattgcgTTTGCGTCAAAGTCTAGGTGGCAATGTGGAATTCATCATTTTCGGTGTCATGGTTGCAGTGGAGAGGCGGCTTCACTTTTGTCAAGTTAAACAGCTGCTGACTGCTAATGTTGCTTACGGCTAACACACGTCCATCCATAACAACATAAAACATTCACCCGCAAATGAGAGTAAGTTACGTTAAACATCTGCAtctataattataaaagtattttgttttatacGTGGCCGAAATGAGTGAATCTGCAGCACACGATTGTTGTTCTACTGAATCGTTTCATTTTAGTGAATGAGTCATTTTTTACGTGTCTGGCATGCTCCAGTACTTAAACAATGCATTGAATCAAAACGACTGCTGATGATCGACTCTAATGATCGAGCTTAACTAATGTTAATGTTATAAACGTGAATTTCAAACTCATAAACCGCTTGCAAGTTCTCGAATCATCAGCTCTGAACCGAGTCTCTGTCGGATGCGCCCAAAGCTGATGACACCTACTGAGACCGCGATTGACTTTGTAACAGAGACGAACTGATGGCATGAATAGAgggtataataatatatttaataactagTGCAAGCGGAATATGTTTACTCTGTGCAACAAGTCCATTGAACCGATTCATTGAATTGAACCGAGGGATGGAACAGATTTGCAGAATAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00010751 lncRNA upstream 363924 32881905 ~ 32976291 (+) False XLOC_004847
TCONS_00010960 lncRNA upstream 813869 32431658 ~ 32526346 (+) False XLOC_004846
TCONS_00010959 lncRNA upstream 813869 32431658 ~ 32526346 (+) False XLOC_004846
TCONS_00010958 lncRNA upstream 838386 32431642 ~ 32501829 (+) False XLOC_004846
TCONS_00009567 lncRNA upstream 844850 32431614 ~ 32495365 (+) False XLOC_004846
TCONS_00010967 lncRNA downstream 82 33341378 ~ 33343226 (+) True XLOC_004850
TCONS_00009580 lncRNA downstream 97556 33438852 ~ 33439421 (+) True XLOC_004851
TCONS_00009585 lncRNA downstream 143387 33484683 ~ 33507829 (+) True XLOC_004853
TCONS_00010968 lncRNA downstream 254606 33595902 ~ 33606588 (+) True XLOC_004854
TCONS_00010970 lncRNA downstream 261228 33602524 ~ 33605438 (+) False XLOC_004855
TCONS_00009573 mRNA upstream 3428 33320504 ~ 33336787 (+) False XLOC_004849
TCONS_00009574 mRNA upstream 7218 33320884 ~ 33332997 (+) True XLOC_004849
TCONS_00009572 mRNA upstream 88750 33151246 ~ 33251465 (+) True XLOC_004847
TCONS_00009569 mRNA upstream 94979 32729470 ~ 33245236 (+) False XLOC_004847
TCONS_00009571 mRNA upstream 94979 33038757 ~ 33245236 (+) False XLOC_004847
TCONS_00009575 mRNA downstream 20652 33361948 ~ 33396299 (+) False XLOC_004851
TCONS_00009576 mRNA downstream 54452 33395748 ~ 33450512 (+) False XLOC_004851
TCONS_00009577 mRNA downstream 55193 33396489 ~ 33404086 (+) False XLOC_004851
TCONS_00009578 mRNA downstream 62398 33403694 ~ 33448199 (+) False XLOC_004851
TCONS_00009579 mRNA downstream 92586 33433882 ~ 33472581 (+) False XLOC_004851
TCONS_00009570 other upstream 388319 32951782 ~ 32951896 (+) True XLOC_004848
TCONS_00009554 other upstream 1423163 31916943 ~ 31917052 (+) True XLOC_004837
TCONS_00009527 other upstream 2131664 31208436 ~ 31208551 (+) True XLOC_004822
TCONS_00009526 other upstream 2144265 31195826 ~ 31195950 (+) True XLOC_004821
TCONS_00009521 other upstream 2583630 30726424 ~ 30756585 (+) False XLOC_004818
TCONS_00009582 other downstream 119526 33460822 ~ 33467729 (+) False XLOC_004852
TCONS_00009593 other downstream 633846 33975142 ~ 33980080 (+) True XLOC_004859
TCONS_00009609 other downstream 1540481 34881777 ~ 34881895 (+) True XLOC_004869
TCONS_00009621 other downstream 1765279 35106575 ~ 35107998 (+) True XLOC_004876
TCONS_00009628 other downstream 2270402 35611698 ~ 35611814 (+) True XLOC_004881

Expression Profile

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