Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00009585 |
| length | 901 |
| lncRNA type | retained_intron |
| GC content | 0.46 |
| exon number | 2 |
| gene id | XLOC_004853 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 33484458 ~ 33537126 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0072659 | protein localization to plasma membrane | biological_process |
| GO:0006612 | protein targeting to membrane | biological_process |
| GO:0071599 | otic vesicle development | biological_process |
| GO:0021591 | ventricular system development | biological_process |
| GO:0043113 | receptor clustering | biological_process |
| GO:0055078 | sodium ion homeostasis | biological_process |
| GO:0012505 | endomembrane system | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016324 | apical plasma membrane | cellular_component |
| GO:0060090 | molecular adaptor activity | molecular_function |
| GO:0005102 | signaling receptor binding | molecular_function |
| GO:0043495 | protein-membrane adaptor activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-031006-7 | Predicted to enable protein-membrane adaptor activity and signaling receptor binding activity. Acts upstream of or within several processes, including otic vesicle development; protein localization to membrane; and sodium ion homeostasis. Predicted to be located in several cellular components, including filopodium; microvillus; and ruffle. Predicted to be active in apical plasma membrane. Is expressed in several structures, including anterior neural keel; central nervous system; mesoderm; neural tube; and pronephros. Used to study ciliopathy and sensorineural hearing loss. Human ortholog(s) of this gene implicated in hypophosphatemic nephrolithiasis/osteoporosis 2. Orthologous to human SLC9A3R1 (SLC9A3 regulator 1). |
| ensembl_id | ENSDART00000136272 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00009580 | lncRNA | upstream | 45262 | 33438852 ~ 33439421 (+) | True | XLOC_004851 |
| TCONS_00010752 | lncRNA | upstream | 141398 | 33340455 ~ 33343285 (+) | False | XLOC_004850 |
| TCONS_00010967 | lncRNA | upstream | 141457 | 33341378 ~ 33343226 (+) | True | XLOC_004850 |
| TCONS_00010966 | lncRNA | upstream | 143387 | 33340215 ~ 33341296 (+) | False | XLOC_004850 |
| TCONS_00010751 | lncRNA | upstream | 508392 | 32881905 ~ 32976291 (+) | False | XLOC_004847 |
| TCONS_00010968 | lncRNA | downstream | 88073 | 33595902 ~ 33606588 (+) | True | XLOC_004854 |
| TCONS_00010970 | lncRNA | downstream | 94695 | 33602524 ~ 33605438 (+) | False | XLOC_004855 |
| TCONS_00010969 | lncRNA | downstream | 94695 | 33602524 ~ 33605438 (+) | True | XLOC_004855 |
| TCONS_00009598 | lncRNA | downstream | 672159 | 34179988 ~ 34181434 (+) | True | XLOC_004860 |
| TCONS_00010971 | lncRNA | downstream | 951840 | 34459669 ~ 34470463 (+) | False | XLOC_004863 |
| TCONS_00009581 | mRNA | upstream | 10654 | 33460794 ~ 33474029 (+) | False | XLOC_004852 |
| TCONS_00009579 | mRNA | upstream | 12102 | 33433882 ~ 33472581 (+) | False | XLOC_004851 |
| TCONS_00009583 | mRNA | upstream | 18845 | 33460823 ~ 33465838 (+) | True | XLOC_004852 |
| TCONS_00009576 | mRNA | upstream | 34171 | 33395748 ~ 33450512 (+) | False | XLOC_004851 |
| TCONS_00009578 | mRNA | upstream | 36484 | 33403694 ~ 33448199 (+) | False | XLOC_004851 |
| TCONS_00009586 | mRNA | downstream | 309498 | 33817327 ~ 33819096 (+) | True | XLOC_004856 |
| TCONS_00009587 | mRNA | downstream | 386567 | 33894396 ~ 33912713 (+) | False | XLOC_004857 |
| TCONS_00009588 | mRNA | downstream | 386671 | 33894500 ~ 33902860 (+) | False | XLOC_004857 |
| TCONS_00009589 | mRNA | downstream | 386836 | 33894665 ~ 33915123 (+) | True | XLOC_004857 |
| TCONS_00009590 | mRNA | downstream | 409110 | 33916939 ~ 33931283 (+) | False | XLOC_004858 |
| TCONS_00009582 | other | upstream | 16954 | 33460822 ~ 33467729 (+) | False | XLOC_004852 |
| TCONS_00009570 | other | upstream | 532787 | 32951782 ~ 32951896 (+) | True | XLOC_004848 |
| TCONS_00009554 | other | upstream | 1567631 | 31916943 ~ 31917052 (+) | True | XLOC_004837 |
| TCONS_00009527 | other | upstream | 2276132 | 31208436 ~ 31208551 (+) | True | XLOC_004822 |
| TCONS_00009526 | other | upstream | 2288733 | 31195826 ~ 31195950 (+) | True | XLOC_004821 |
| TCONS_00009593 | other | downstream | 467313 | 33975142 ~ 33980080 (+) | True | XLOC_004859 |
| TCONS_00009609 | other | downstream | 1373948 | 34881777 ~ 34881895 (+) | True | XLOC_004869 |
| TCONS_00009621 | other | downstream | 1598746 | 35106575 ~ 35107998 (+) | True | XLOC_004876 |
| TCONS_00009628 | other | downstream | 2103869 | 35611698 ~ 35611814 (+) | True | XLOC_004881 |
| TCONS_00009648 | other | downstream | 4190773 | 37698602 ~ 37698717 (+) | True | XLOC_004908 |
