RNA id: TCONS_00010968


Basic Information

Item Value
RNA id TCONS_00010968
length 943
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id XLOC_004854
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 33595902 ~ 33606588 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCCAGCACACCTGAAGGACTTCCTGCTGGAGGGTGTCCCGTCTGTTCAGGATCCAGCAGCTGTGATCAGactgatctggctccatacattCTCGCTGACAACCATatgtaaaacatttataaacCTCTGAAATGACAGAATGAGAACATTTCAAGTGGAAACATTCTGGCTTTGACTGGAAAGCTGTGCTGATATTCAACTTTGcagtaaaaatagtttaaaagaaGACTTAAAAAAGGAAAAGATGTTCATGCATTTAATCTGATATcgatctggaaaataaaactgATTGCAGGTAAGCTAGTGAATTAGTTTGACATTCTGGAAGCAAAGTTTTTCAGCTAAACAGCtgaaatattgttataaataaactcaCTTGTGCATCACTAAATAAAAAACGAATGAAATATTCCCCCTCTGAATATGAGGTAAGTCGAGGCGATGACATTCACATTATAACCTGTTAAAACAGGCTCCGACAAGCTCTTCTGACAATGTAAAtaaactgcactaaaaatgtatacaaacacTAAGACCAAAGCTCTTTGTGTTCGAAACTGAAAAGATTTCGATAAAACCCTATTATTTCACAAAAtctaaaatacatgtaaaatcatgctaatttagCCCTCTGTTTGTTGCTTGTATCTTGCAGTTTTGAGGTTTCGAGGGTAATCAAAGAATAAAATAATCCCTTAATGAATGACCCTGTCCAAACCACAGCAGCATGCAGATGAACGTCCCTCACACAGTACAGATGAGCGCAGATCAAAGACACTGAAGAAAACAGCCCTCTGTGGCCTTCAATGGAGCCATGTGAAACATCATCTACTCCATCACTCTAATCAACAGGACAAGGACAGACGTGGGTCAGAAAGGAGAGTTCATTCCCAGCTTCGTCTCAAACTGAAGCTTCTGCCTCTTCTGGTAACGCACTCGTA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00009585 lncRNA upstream 88073 33484683 ~ 33507829 (+) True XLOC_004853
TCONS_00009580 lncRNA upstream 156481 33438852 ~ 33439421 (+) True XLOC_004851
TCONS_00010752 lncRNA upstream 252617 33340455 ~ 33343285 (+) False XLOC_004850
TCONS_00010967 lncRNA upstream 252676 33341378 ~ 33343226 (+) True XLOC_004850
TCONS_00010966 lncRNA upstream 254606 33340215 ~ 33341296 (+) False XLOC_004850
TCONS_00009598 lncRNA downstream 573400 34179988 ~ 34181434 (+) True XLOC_004860
TCONS_00010971 lncRNA downstream 853081 34459669 ~ 34470463 (+) False XLOC_004863
TCONS_00010972 lncRNA downstream 853130 34459718 ~ 34470463 (+) True XLOC_004863
TCONS_00010973 lncRNA downstream 1125727 34732315 ~ 34746331 (+) True XLOC_004864
TCONS_00010974 lncRNA downstream 1237854 34844442 ~ 34846842 (+) True XLOC_004867
TCONS_00009584 mRNA upstream 58776 33484458 ~ 33537126 (+) False XLOC_004853
TCONS_00009581 mRNA upstream 121873 33460794 ~ 33474029 (+) False XLOC_004852
TCONS_00009579 mRNA upstream 123321 33433882 ~ 33472581 (+) False XLOC_004851
TCONS_00009583 mRNA upstream 130064 33460823 ~ 33465838 (+) True XLOC_004852
TCONS_00009576 mRNA upstream 145390 33395748 ~ 33450512 (+) False XLOC_004851
TCONS_00009586 mRNA downstream 210739 33817327 ~ 33819096 (+) True XLOC_004856
TCONS_00009587 mRNA downstream 287808 33894396 ~ 33912713 (+) False XLOC_004857
TCONS_00009588 mRNA downstream 287912 33894500 ~ 33902860 (+) False XLOC_004857
TCONS_00009589 mRNA downstream 288077 33894665 ~ 33915123 (+) True XLOC_004857
TCONS_00009590 mRNA downstream 310351 33916939 ~ 33931283 (+) False XLOC_004858
TCONS_00009582 other upstream 128173 33460822 ~ 33467729 (+) False XLOC_004852
TCONS_00009570 other upstream 644006 32951782 ~ 32951896 (+) True XLOC_004848
TCONS_00009554 other upstream 1678850 31916943 ~ 31917052 (+) True XLOC_004837
TCONS_00009527 other upstream 2387351 31208436 ~ 31208551 (+) True XLOC_004822
TCONS_00009526 other upstream 2399952 31195826 ~ 31195950 (+) True XLOC_004821
TCONS_00009593 other downstream 368554 33975142 ~ 33980080 (+) True XLOC_004859
TCONS_00009609 other downstream 1275189 34881777 ~ 34881895 (+) True XLOC_004869
TCONS_00009621 other downstream 1499987 35106575 ~ 35107998 (+) True XLOC_004876
TCONS_00009628 other downstream 2005110 35611698 ~ 35611814 (+) True XLOC_004881
TCONS_00009648 other downstream 4092014 37698602 ~ 37698717 (+) True XLOC_004908