Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00009599 |
| length | 874 |
| RNA type | mRNA |
| GC content | 0.57 |
| exon number | 2 |
| gene id | XLOC_004861 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007123.7 |
| NCBI id | CM002896.2 |
| chromosome length | 49182954 |
| location | 34258139 ~ 34277465 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0046854 | phosphatidylinositol phosphorylation | biological_process |
| GO:0035556 | intracellular signal transduction | biological_process |
| GO:0007259 | receptor signaling pathway via JAK-STAT | biological_process |
| GO:0043066 | negative regulation of apoptotic process | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0005942 | phosphatidylinositol 3-kinase complex | cellular_component |
| GO:0046935 | 1-phosphatidylinositol-3-kinase regulator activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-2528 | Predicted to enable 1-phosphatidylinositol-3-kinase regulator activity. Predicted to be involved in phosphatidylinositol phosphate biosynthetic process. Predicted to act upstream of or within several processes, including intracellular signal transduction; negative regulation of apoptotic process; and receptor signaling pathway via JAK-STAT. Predicted to be part of phosphatidylinositol 3-kinase complex. Is expressed in eye; heart; lateral line ganglion; and segmental plate. Human ortholog(s) of this gene implicated in atopic dermatitis 4. Orthologous to human SOCS3 (suppressor of cytokine signaling 3). |
| ensembl_id | ENSDART00000153127 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00009598 | lncRNA | upstream | 76705 | 34179988 ~ 34181434 (+) | True | XLOC_004860 |
| TCONS_00010968 | lncRNA | upstream | 651551 | 33595902 ~ 33606588 (+) | True | XLOC_004854 |
| TCONS_00010970 | lncRNA | upstream | 652701 | 33602524 ~ 33605438 (+) | False | XLOC_004855 |
| TCONS_00010969 | lncRNA | upstream | 652701 | 33602524 ~ 33605438 (+) | True | XLOC_004855 |
| TCONS_00009585 | lncRNA | upstream | 750310 | 33484683 ~ 33507829 (+) | True | XLOC_004853 |
| TCONS_00010971 | lncRNA | downstream | 183338 | 34459669 ~ 34470463 (+) | False | XLOC_004863 |
| TCONS_00010972 | lncRNA | downstream | 183387 | 34459718 ~ 34470463 (+) | True | XLOC_004863 |
| TCONS_00010973 | lncRNA | downstream | 455984 | 34732315 ~ 34746331 (+) | True | XLOC_004864 |
| TCONS_00010974 | lncRNA | downstream | 568111 | 34844442 ~ 34846842 (+) | True | XLOC_004867 |
| TCONS_00010975 | lncRNA | downstream | 781816 | 35058147 ~ 35059608 (+) | True | XLOC_004874 |
| TCONS_00009596 | mRNA | upstream | 65184 | 34119439 ~ 34192955 (+) | False | XLOC_004860 |
| TCONS_00009594 | mRNA | upstream | 66059 | 34051434 ~ 34192080 (+) | False | XLOC_004860 |
| TCONS_00009595 | mRNA | upstream | 83602 | 34051848 ~ 34174537 (+) | False | XLOC_004860 |
| TCONS_00009597 | mRNA | upstream | 83772 | 34127573 ~ 34174367 (+) | False | XLOC_004860 |
| TCONS_00009592 | mRNA | upstream | 269254 | 33975065 ~ 33988885 (+) | False | XLOC_004859 |
| TCONS_00009601 | mRNA | downstream | 102402 | 34378733 ~ 34397139 (+) | True | XLOC_004862 |
| TCONS_00009602 | mRNA | downstream | 455931 | 34732262 ~ 34733438 (+) | False | XLOC_004864 |
| TCONS_00009603 | mRNA | downstream | 487464 | 34763795 ~ 34822821 (+) | False | XLOC_004865 |
| TCONS_00009605 | mRNA | downstream | 491775 | 34768106 ~ 34820808 (+) | False | XLOC_004865 |
| TCONS_00009604 | mRNA | downstream | 491775 | 34768106 ~ 34820808 (+) | False | XLOC_004865 |
| TCONS_00009593 | other | upstream | 278059 | 33975142 ~ 33980080 (+) | True | XLOC_004859 |
| TCONS_00009582 | other | upstream | 790410 | 33460822 ~ 33467729 (+) | False | XLOC_004852 |
| TCONS_00009570 | other | upstream | 1306243 | 32951782 ~ 32951896 (+) | True | XLOC_004848 |
| TCONS_00009554 | other | upstream | 2341087 | 31916943 ~ 31917052 (+) | True | XLOC_004837 |
| TCONS_00009527 | other | upstream | 3049588 | 31208436 ~ 31208551 (+) | True | XLOC_004822 |
| TCONS_00009609 | other | downstream | 605446 | 34881777 ~ 34881895 (+) | True | XLOC_004869 |
| TCONS_00009621 | other | downstream | 830244 | 35106575 ~ 35107998 (+) | True | XLOC_004876 |
| TCONS_00009628 | other | downstream | 1335367 | 35611698 ~ 35611814 (+) | True | XLOC_004881 |
| TCONS_00009648 | other | downstream | 3422271 | 37698602 ~ 37698717 (+) | True | XLOC_004908 |
| TCONS_00009670 | other | downstream | 5153871 | 39430202 ~ 39430317 (+) | True | XLOC_004923 |
